GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 03:52:11, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 16.
CP141942.1:174634-174658
TTTAGAAGTTTGGTGGCTGTTGAATTCATT174634GCTTACAAGGTTTTTATGGTCCTTTAACACGTCCTAGGTACTGCTATCTTAGACC
Malus hybrid cultivar cultivar Royalty chromosome 16.
CP141968.1:170569-170593
TTTAGAAGTTTGGTGGCTGTTGAATTCATT170569GCTTACAAGGTTTTTATGGTCCTTTAACACGTCCTAGGTACTGTTATCTTAGACC
Malus hybrid cultivar cultivar SH6 chromosome 16.
CP143373.1:177488-177512
TTTAGAAGTTTGGTGGCTGTTGAATTCATT177488GCTTACAAGGTTTTTATGGTCCTTTAACACGTCCTAGGTACTGTTATCTTAGACC
Malus hybrid cultivar cultivar SH6 chromosome 16.
CP143390.1:146760-146784
TTTAGAAGTTTGGTGGCTGTTGAATTCATT146760GCTTACAAGGTTTTTATGGTCCTTTAACACGTCCTAGGTACTGTTATCTTAGACC
Malus sylvestris genome assembly, chromosome: 16.
OU696518.1:179135-179159
TTTAGAAGTTTGGTGGCTGTTGAATTCATT179135GCTTACAAGGTTTTTATGGTCCTTTAACACGTCCTAGGTACTGTTATCTTAGACC
Malus domestica genome assembly, chromosome: 16.
OU696692.1:175811-175835
TTTAGAAGTTTGGTGGCTGTTGAATTCATT175811GCTTACAAGGTTTTTATGGTCCTTTAACACGTCCTAGGTACTGTTATCTTAGACC
Malus domestica genome assembly, chromosome: 16.
OU744557.1:174061-174085
TTTAGAAGTTTGGTGGCTGTTGAATTCATT174061GCTTACAAGGTTTTTATGGTCCTTTAACACGTCCTAGGTACTGTTATCTTAGACC
Malus domestica genome assembly, chromosome: 16.
OU744968.1:185223-185247
TTTAGAAGTTTGGTGGCTGTTGAATTCATT185223GCTTACAAGGTTTTTATGGTCCTTTAACACGTCCTAGGTACTGCTATCTTAGACC
Malus domestica genome assembly, chromosome: 16.
OU745006.1:181157-181181
TTTAGAAGTTTGGTGGCTGTTGAATTCATT181157GCTTACAAGGTTTTTATGGTCCTTTAACACGTCCTAGGTACTGTTATCTTAGACC
Malus x robusta genome assembly, chromosome: 3.
OY720327.1:175196-175220
TTTAGAAGTTTGGTGGCTGTTGAATTCATT175196GCTTACAAGGTTTTTATGGTCCTTTAACACGTCCTAGGTACTGTTATCTTAGACC
Crataegus laevigata genome assembly, chromosome: 11.
OY756948.1:190055-190079
TTTAGAAGTTTGGTGGCTGTTGAATTCATT190055GCTTACAAGGTTTTTATGGTCCTTTAACACGTCCTAGGTACTGTTATCTTAGACC
Pyrus communis genome assembly, chromosome: 4.
OY757071.1:165399-165423
TTTAGAAGTTTGGTGGCTGTTGAATTCATT165399GCTTACAAGGTTTTTATGGTCCTTTAACACGTCCTAGGTACTGTTTTCTTAGACC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCTTACAAGGTTTTTATGGTCCTTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCTTACAAGGTTTTTATGGTCCTTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.096 | 0.087 | search_plus_done; http://172.18.8.135:50400/match?q=GCTTACAAGGTTTTTATGGTCCTTT&k=0&no_gap=0&offset=0&limit=50
0.117 | 0.021 | search_minus_done; http://172.18.8.135:50400/match?q=AAAGGACCATAAAAACCTTGTAAGC&k=0&no_gap=0&offset=0&limit=38
0.117 | 0.000 | cgi_end;

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