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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-12 08:09:22, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

KBrB084F02F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB084F02, genomic survey sequence.
DX073829.1:635-654
AGACTGAATCCAGTATACAGTGCGAGTTTT635GCTTCTGAAGAGCACTCCTAATACATTATGAATTCCATATGAAGATCTAT
KBrB110J10F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB110J10, genomic survey sequence.
ED522661.1:677-696
AGACTGAATCCAGTATACAGTGCGAGTTTT677GCTTCTGAAGAGCACTCCTAATACATTATGAATTTCATATGAAGTTCTAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084F02, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189487.2:660-679
AGACTGAATCCAGTATACAGTGCGAGTTTT660GCTTCTGAAGAGCACTCCTAATACATTATGAATTCCATATGAAGTTCTAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS001F19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC189625.2:138009-138028
AGACTGAATCCAGTATACAGTGCGAGTTTT138009GCTTCTGAAGAGCACTCCTAATACATTATGAATTCCATATGAAGTTCTAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' linkage group A02 clone KBrH026E14, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.
AC234743.1:98768-98787
AGACTGAATCCAGTATACAGTGCGAGTTTT98768GCTTCTGAAGAGCACTCCTAATACATTATGAATTCCATATGAAGTTCTAT
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:59352061-59352080
AGACTGAATCCAGTATACAGTGCGAGTTTT59352061GCTTCTGAAGAGCACTCCTAATACATTATGAATTCCATATGAAGTTCTAT
Brassica napus genome assembly, chromosome: A09.
HG994363.1:43214745-43214764
AGACTGAATCCAGTATACAGTGCGAGTTTT43214745GCTTCTGAAGAGCACTCCTAATACATTATGAATTCCATATGAAGTTCTAT
Brassica napus genome assembly, chromosome: C08.
HG994372.1:29010461-29010480
AGACTGAATCCAGTATACAGTGCGAGTTTT29010461GCTTCTGAAGAGCACTCCTAATACATTATGAATTCAATATGAAGTTTCTA
Brassica rapa genome, scaffold: A09.
LR031568.1:47543032-47543051
AGACTGAATCCAGTATACAGTGCGAGTTTT47543032GCTTCTGAAGAGCACTCCTAATACATTATGAATTCCATATGAAGTTCTAT
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:58009621-58009640
AGACTGAATCCAGTATACAGTGCGAGTTTT58009621GCTTCTGAAGAGCACTCCTAATACATTATGAATTCCATATGAAGTTCTAT
Cyclopterus lumpus genome assembly, chromosome: 11.
OY735158.1:4234321-4234340
GATGCGTCTCTGGCAAATCTGCTAACTTTG4234321TAGGAGTGCTCTTCAGAAGCGTGCCCCTTTAACTCAGAAACTCAGTGACA
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:12808045-12808064
TAGAAACTTCATATTGAATTCATAATGTAT12808045TAGGAGTGCTCTTCAGAAGCAAAACTCGCACTGTATACTGGATTCAGTCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCTTCTGAAGAGCACTCCTA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCTTCTGAAGAGCACTCCTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.315 | 0.306 | search_plus_done; http://172.18.8.135:50400/match?q=GCTTCTGAAGAGCACTCCTA&k=0&no_gap=0&offset=0&limit=50
0.433 | 0.118 | search_minus_done; http://172.18.8.135:50400/match?q=TAGGAGTGCTCTTCAGAAGC&k=0&no_gap=0&offset=0&limit=40
0.435 | 0.001 | cgi_end;

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