GGGenome | Results

2025-04-09 05:05:18, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Solanum melongena mRNA, clone: PLA05E17, 3'end, expressed in mixture of placenta and immature seed at 10d after anthesis.
FS045376.1:220-239

CTAGAAATAGCAAAGGGATCGGACCAGGAA220GCTTGATTCCCCACAAAGAAAAAAAAGTAAGATTAAAATGATTCAAACCT

TSA: Physalis peruviana Php00a07513.17466 mRNA sequence.
JO141538.1:1062-1081

CTAGAAATAGCAAAGGGATCGGACCAAGAA1062GCTTGATTCCCCACAAAGAATAAAGTGACTTTTAAGAGTCATTCATGAGA

Gallus gallus breed Huxu chromosome 14.
CP100568.1:10620993-10621012

ATTGACAGTCATTTCCCTAAACTGATGTGC10620993TTCTTTGTGGGGAATCAAGCTCCCCTGAATCCTAGGTAAGAGTTTAAATT

Petunia x hybrida EST, clone dr001P0016A04_F.ab1 2007-08-10.
FN005227.1:358-377

TTGAAATGAATGACTCCAAAGTCACTTTTT358TTCTTTGTGGGGAATCAAGCATCGTGGTCCGATTATATCCCTTTGCTATA

Solanum melongena mRNA, clone: PLA05E17, 5'end, expressed in mixture of placenta and immature seed at 10d after anthesis.
FS045375.1:433-452

AGGTTTGAATCATTTTAATCTTACTTTTTT433TTCTTTGTGGGGAATCAAGCTTCCTGGTCCGATCCCTTTGCTATTTCTAG

TSA: Petunia axillaris PETAX015969:Contig1 mRNA sequence.
JI341120.1:38-57

TTGAAATGAATGACTCCAAAGTCACTTTTT38TTCTTTGTGGGGAATCAAGCATCGTGGTCCGATTATATCCCTTTGCTATA

TSA: Petunia integrifolia subsp. inflata PETIN068485:Contig1 mRNA sequence.
JI382282.1:89-108

TGAAATGAATGACTCCAAAGTCACTTTTTT89TTCTTTGTGGGGAATCAAGCATCGTGGTCCGATTATATCCCTTTGCTATA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.227 | 0.218 | search_plus_done; http://172.18.8.135:50400/match?q=GCTTGATTCCCCACAAAGAA&k=0&no_gap=0&offset=0&limit=50
0.422 | 0.195 | search_minus_done; http://172.18.8.135:50400/match?q=TTCTTTGTGGGGAATCAAGC&k=0&no_gap=0&offset=0&limit=48
0.425 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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