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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 11:53:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

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Results:

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Erpetoichthys calabaricus genome assembly, chromosome: 8.
LR536439.2:43055726-43055745
AGAGATTTCCCAAAAGAGTTTTCTATACAG43055726GCTTGTTGACAGCACAAGGATCATTTACTGTACTTTCCATATCTTCCAAT
OL1042F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL1042, mRNA sequence.
EH413887.1:521-540
TACACATCACATTCTTCTCAAACAACGGTC521GCTTGTTGACAGCACAAGGATAAACCGGAGCTCCGATGATGTTCTTGTTT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_18987.
FX736600.1:1080-1099
GACACATCACATTTTTCTCAGACAAAGGTC1080GCTTGTTGACAGCACAAGGATAAACGGGAGCTCCGATGATGTTCTTGTTT
KBrB036J10F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB036J10, genomic survey sequence.
DX037686.1:803-822
TAATTATATAGACTTACTCAGACAAAGGTC803GCTTGTTGACAGCACAAGGATAAACCGG
BOT01-17E5TR BOT01 Brassica oleracea genomic clone BOT01-17E5, genomic survey sequence.
FI683667.1:782-801
TCTGTTTATAAACTTACTCAAACAACGGTC782GCTTGTTGACAGCACAAGGATAAACCGGAGCTCCGATGATGTTCTTGTTT
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 88 unordered pieces.
FJ789648.1:269571-269590
TAATTATATAGACTTACTCAGACAAAGGTC269571GCTTGTTGACAGCACAAGGATAAACCGGAGCTCCGATGATGTTCTTGTTT
Chlamydomonas reinhardtii strain CC-5816 chromosome 4.
CP097814.1:3346573-3346592
GGCAGTGCGACAGGCGGATAAAGCAGTCAT3346573GCTTGTTGACAGCACAAGGAATCAAACACGCTGGTATGCATGCGTATGTG
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:11403856-11403875
TCTGTTTATAAACTTACTCAGACAACGGTC11403856GCTTGTTGACAGCACAAGGATAAACTGGAGCTCTGATGATGTTCTTGTTT
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:58226460-58226479
TCTGTTTATAAACTTACTCAGACAACGGTC58226460GCTTGTTGACAGCACAAGGATAAACTGGAGCTCTGATGATGTTCTTGTTT
Brassica napus cultivar Xiang5A chromosome 12.
CP123887.1:54113708-54113727
AATTATATAGACTTTACTCAGACAAAGGTC54113708GCTTGTTGACAGCACAAGGATAAACCGGAGCTCCGATGATGTTCTTGTTT
Brassica napus cultivar Xiang5A chromosome 17.
CP123892.1:6415741-6415760
TCTGTTTATAAACTTACTCAGACAACGGTC6415741GCTTGTTGACAGCACAAGGATAAACTGGAGCTCTGATGATGTTCTTGTTT
Brassica napus genome assembly, chromosome: A07.
HG994361.1:27764453-27764472
TAATTATATAGACTTACTCAGACAAAGGTC27764453GCTTGTTGACAGCACAAGGATAAACCGGAGCTCCGATGATGTTCTTGTTT
Brassica napus genome assembly, chromosome: C02.
HG994366.1:32649289-32649308
TCTGTTTATAAACTTACTCAAACAACGGTC32649289GCTTGTTGACAGCACAAGGATAAACCGGAGCTCCGATGATGTTCTTGTTT
Brassica napus genome assembly, chromosome: C06.
HG994370.1:48164918-48164937
AATTATATAGACTTTACTCAGACAAAGGTC48164918GCTTGTTGACAGCACAAGGATAAACCGGAGCTCCGATGATGTTCTTGTTT
Brassica rapa genome, scaffold: A03.
LR031572.1:11167003-11167022
TCTGTTTATAAACTTACTCAGACAACGGTC11167003GCTTGTTGACAGCACAAGGATAAACTGGAGCTCTGATGATGTTCTTGTTT
Brassica rapa genome, scaffold: A02.
LR031573.1:191655-191674
TCTGTTTATAAACTTACTCAGACAACGGTC191655GCTTGTTGACAGCACAAGGATAAACTGGAGCTCTGATGATGTTCTTGTTT
Brassica rapa genome, scaffold: A07.
LR031574.1:26758886-26758905
GTTTATAATAAACTTACTCAGACAAAGGTC26758886GCTTGTTGACAGCACAAGGATAAACCGGAGCTCCGATGATGTTCTTGTTT
Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:33828477-33828496
TCTGTTTATAAACTTACTCAAACAACGGTC33828477GCTTGTTGACAGCACAAGGATAAACCGGAGCTCCGATGATGTTCTTGTTT
Brassica oleracea HDEM genome, scaffold: C6.
LR031880.1:44468490-44468509
AATTATATAGACTTTACTCAGACAAAGGTC44468490GCTTGTTGACAGCACAAGGATAAACCGGAGCTCCGATGATGTTCTTGTTT
Brassica rapa genome assembly, chromosome: A02.
LS974618.2:201679-201698
TCTGTTTATAAACTTACTCAGACAACGGTC201679GCTTGTTGACAGCACAAGGATAAACTGGAGCTCTGATGATGTTCTTGTTT
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:11291462-11291481
TCTGTTTATAAACTTACTCAGACAACGGTC11291462GCTTGTTGACAGCACAAGGATAAACTGGAGCTCTGATGATGTTCTTGTTT
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:27101824-27101843
GTTTATAATAAACTTACTCAGACAAAGGTC27101824GCTTGTTGACAGCACAAGGATAAACCGGAGCTCCGATGATGTTCTTGTTT
Raphanus sativus genome assembly, chromosome: 7.
OY743213.1:8479518-8479537
GTTTGTAATCAACTTACTCAGACAAAGGTC8479518GCTTGTTGACAGCACAAGGATAAACCGGAGCTCCGATGATGTTCTTGTTT
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE01a010B03_SP6.
AM058989.1:281-300
AAACAAGAACATCATCGGAGCTCCGGTTTA281TCCTTGTGCTGTCAACAAGCGACCGTTGTTTGAGAAGAATGTGATGTGTA
BN15.028K10F020326 BN15 Brassica napus cDNA clone BN15028K10, mRNA sequence.
CD816131.1:299-318
AAACAAGAACATCATCGGAGCTCCGGTTTA299TCCTTGTGCTGTCAACAAGCGACCGTTGTTTGAGAAGAATGTGATGTGTA
38RDBRM_UP_020_A06_01APR2004_048 Brassica rapa 38RDBRM Brassica rapa cDNA 5', mRNA sequence.
CX267273.1:395-414
AAACAAGAACATCATCGGAGCTCCGGTTTA395TCCTTGTGCTGTCAACAAGCGACCTTTGTCTGAGAAAAATGTGATGTGTC
Brassica oleracea var. viridis mRNA, clone: KALE-040M17, 5' end sequence.
DK471141.1:324-343
AAACAAGAACATCATCGGAGCTCCGGTTTA324TCCTTGTGCTGTCAACAAGCGACCTTTGTCTGAGAAAAATGTGATGTGTC
Brassica oleracea var. viridis mRNA, clone: KALE-058H24, 5' end sequence.
DK477907.1:324-343
AAACAAGAACATCATCGGAGCTCCGGTTTA324TCCTTGTGCTGTCAACAAGCGACCTTTGTCTGAGAAAAATGTGATGTGTC
Brassica oleracea var. viridis mRNA, clone: KALE-112N04, 5' end sequence.
DK498698.1:318-337
AAACAAGAACATCATCGGAGCTCCGGTTTA318TCCTTGTGCTGTCAACAAGCGACCTTTGTCTGAGAAAAATGTGATGTGTC
Brassica oleracea var. viridis mRNA, clone: KALE-130C18, 5' end sequence.
DK505332.1:246-265
AAACAAGAACATCATCGGAGCTCCGGTTTA246TCCTTGTGCTGTCAACAAGCGACCTTTGTCTGAGAAAAATGTGATGTGTC
47RDOAH_UP_033_A06_17AUG2004_048 O. Alba 47RDOAH Brassica oleracea cDNA 5', mRNA sequence.
DY028376.1:302-321
AAACAAGAACATCATCGGAGCTCCGGTTTA302TCCTTGTGCTGTCAACAAGCGACCGTTGTTTGAGAAGAATGTGATGTGTA
47RDOAH_UP_045_F08_19AUG2004_054 O. Alba 47RDOAH Brassica oleracea cDNA 5', mRNA sequence.
DY029784.1:204-223
AAACAAGAACATCATCGGAGCTCCGGTTTA204TCCTTGTGCTGTCAACAAGCGACCGTTGTTTGAGAAGAATGTGATGTGTA
BNBS6DCT_UP_036_F04_15APR2005_022 Brassica napus seeds BNBS6DCT Brassica napus cDNA 5', mRNA sequence.
EE458600.1:280-299
AAACAAGAACATCATCAGAGCTCCAGTTTA280TCCTTGTGCTGTCAACAAGCGACCGTTGTCTGAGAAGAATGTGATGTGTA
BNBS8DCT_UP_032_C03_17APR2005_027 Brassica napus seeds BNBS8DCT Brassica napus cDNA 5', mRNA sequence.
EE460691.1:199-218
AAACAAGAACATCATCAGAGCTCCAGTTTA199TCCTTGTGCTGTCAACAAGCGACCGTTGTCCGAGAAGAATGTGATGTGTA
BNSCS5CT_UP_021_D08_24JAN2005_058 Brassica napus seed coat BNSCS5CT Brassica napus cDNA 5', mRNA sequence.
EE472155.1:302-321
AAACAAGAACATCATCAGAGCTCCAGTTTA302TCCTTGTGCTGTCAACAAGCGACCGTTGTCTGAGAAGAATGTGATGTGTA
OL1042R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL1042, mRNA sequence.
EH413874.1:210-229
AAACAAGAACATCATCGGAGCTCCGGTTTA210TCCTTGTGCTGTCAACAAGCGACCGTTGTTTGAGAAGAATGTGATGTGTA
EST7530 11-19 DAP Brassica Napus seed cDNA library Brassica napus cDNA clone B402C091, mRNA sequence.
EL630022.1:297-316
AAACAAGAACATCATCAGAGCTCCAGTTTA297TCCTTGTGCTGTCAACAAGCGACCGTTGTCTGAGAAGAATGTGATGTGTA
36RDBRG_UP_089_D06_20JAN2006_042 Brassica rapa 36RDBRG Brassica rapa cDNA 5', mRNA sequence.
ES930267.1:335-354
AAACAAGAACATCATCAGAGCTCCAGTTTA335TCCTTGTGCTGTCAACAAGCGACCGTTGTCTGAGAAGAATGTGATGTGTA
37RDBRH_UP_089_C03_23JAN2006_027 Brassica rapa 37RDBRH Brassica rapa cDNA 5', mRNA sequence.
ES932779.1:306-325
AAACAAGAACATCATCGGAGCTCCGGTTTA306TCCTTGTGCTGTCAACAAGCGACCTTTGTCTGAGAAAAATGTGATGTGTC
47RDOAH_UP_084_B05_01FEB2006_045 Brassica oleracea 47RDOAH Brassica oleracea cDNA 5', mRNA sequence.
ES942797.1:231-250
AAACAAGAACATCATCGGAGCTCCGGTTTA231TCCTTGTGCTGTCAACAAGCGACCGTTGTCTGAGAAGAATGTGATGTGTA
BNAEN1GH_UP_073_G01_22JUL2006_003 Brassica napus BNAEN1GH Brassica napus cDNA 5', mRNA sequence.
ES991911.1:325-344
AAACAAGAACATCATCAGAGCTCCAGTTTA325TCCTTGTGCTGTCAACAAGCGACCGTTGTCTGAGAAGAATGTGATGTGTA
BNSCS3CT_UP_205_H09_13MAY2007_065 Brassica napus BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EV053121.1:297-316
AAACAAGAACATCATCAGAGCTCCAGTTTA297TCCTTGTGCTGTCAACAAGCGACCGTTGTCTGAGAAGAATGTGATGTGTA
BNSCS5CT_UP_164_H07_31MAY2007_049 Brassica napus BNSCS5CT Brassica napus cDNA 5', mRNA sequence.
EV089628.1:194-213
AAACAAGAACATCATCAGAGCTCCAGTTTA194TCCTTGTGCTGTCAACAAGCGACCGTTGTCTGAGAAGAATGTGATGTGTA
BR069120 primary inflorescence cDNA library KBST Brassica rapa subsp. pekinensis cDNA clone KBST-07A08 5', mRNA sequence.
EX084476.1:310-329
AAACAAGAACATCATCGGAGCTCCGGTTTA310TCCTTGTGCTGTCAACAAGCGACCTTTGTCTGAGAAAAATGTGATGTGTC
BN24DYSC_UP_061_D02_6FEB2008_010 BN24DYSC Brassica napus cDNA 5', mRNA sequence.
FG575936.1:260-279
AAACAAGAACATCATCAGAGCTCCAGTTTA260TCCTTGTGCTGTCAACAAGCGACCGTTGTCTGAGAAGAATGTGATGTGTA
BNAOV1GH_T3_035_A07_12JULY2007_063 BNAOV1GH Brassica napus cDNA 5', mRNA sequence.
GR442720.1:223-242
AAACAAGAACATCATCAGAGCTCCAGTTTA223TCCTTGTGCTGTCAACAAGCGACCGTTGTCTGAGAAGAATGTGATGTGTA
BNAOV1GH_T3_074_E04_17SEPT2007_024 BNAOV1GH Brassica napus cDNA 5', mRNA sequence.
GR448170.1:138-157
AAACAAGAACATCATCAGAGCTCCAGTTTA138TCCTTGTGCTGTCAACAAGCGACCGTTGTCTGAGAAGAATGTGATGTGTA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_15929.
FX677971.1:348-367
AAACAAGAACATCATCGGAGCTCCCGTTTA348TCCTTGTGCTGTCAACAAGCGACCTTTGTCTGAGAAAAATGTGATGTGTC
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_2678.
FX698228.1:316-335
AAACAAGAACATCATCGGAGCTCCGGTTTA316TCCTTGTGCTGTCAACAAGCGACCTTTGTCTGAGAAAAATGTGATGTGTC
Brassica rapa subsp. pekinensis clone KBrH028G06, complete sequence.
CU695294.1:40383-40402
AAACAAGAACATCATCGGAGCTCCGGTTTA40383TCCTTGTGCTGTCAACAAGCGACCTTTGTCTGAGTAAGTCTATATAATTA
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 99 unordered pieces.
FJ789646.1:846183-846202
AAACAAGAACATCATCGGAGCTCCGGTTTA846183TCCTTGTGCTGTCAACAAGCGACCTTTGTCTGAGTAAGTCTATATAATTA
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:1611141-1611160
AAACAAGAACATCATCGGAGCTCCGGTTTA1611141TCCTTGTGCTGTCAACAAGCGACCTTTGTCTGAGTAAGTCTATATAATTA
Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:34029855-34029874
AAACAAGAACATCATCGGAGCTCCGGTTTA34029855TCCTTGTGCTGTCAACAAGCGACCGTTGTTTGAGTAAGTTTATAAACAGA
Brassica oleracea HDEM genome, scaffold: C6.
LR031880.1:24456439-24456458
AAACAAGAACATCATCGGAGCTCCGGTTTA24456439TCCTTGTGCTGTCAACAAGCGACCGTTGTCTGAGTAAGTTTATAAACAGA
Raphanus sativus genome assembly, chromosome: 8.
LR778317.1:24499864-24499883
AAACAAGAACATCATCGGAGCTCCGGTTTA24499864TCCTTGTGCTGTCAACAAGCGACCTTTGTCTGAGTAAGTTGATTACAAAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCTTGTTGACAGCACAAGGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCTTGTTGACAGCACAAGGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.351 | 0.342 | search_plus_done; http://172.18.8.135:50400/match?q=GCTTGTTGACAGCACAAGGA&k=0&no_gap=0&offset=0&limit=50
2.910 | 2.559 | search_minus_done; http://172.18.8.135:50400/match?q=TCCTTGTGCTGTCAACAAGC&k=0&no_gap=0&offset=0&limit=27
2.931 | 0.021 | cgi_end;

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