GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-04 11:50:16, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Pyrus communis mRNA, contig: lc2018.
FX610605.1:205-224
TCGCTGTAAATCGCCTTGTCTGTTCCCGTG205GCTTTCCAGTAACCCGACACGGTTGCCCGATTCGGGCGTATCCCGTTCGG
TSA: Pyrus x bretschneideri Unigene1834_XinShao mRNA sequence.
JR597201.1:838-857
TCGCTGTAAATCGCCTTGTCTGTTCCCGTG838GCTTTCCAGTAACCCGACACGGTTGCCCGATTCGGGCGTATCCCGTTCGG
TSA: Pyrus x bretschneideri Unigene1835_XinShao mRNA sequence.
JR597202.1:938-957
TCGCTGTAAATCGCCTTGTCTGTTCCCGTG938GCTTTCCAGTAACCCGACACGGTTGCCCGATTCGGGCGTATCCCGTTCGG
TSA: Pyrus x bretschneideri Unigene8425_XinShao mRNA sequence.
JR603553.1:838-857
TCGCTGTAAATCGCCTTGTCTGTTCCCGTG838GCTTTCCAGTAACCCGACACGGTTGCCCGATTCGGGCGTATCCCGTTCGG
TSA: Pyrus x bretschneideri Unigene17429_XinShao mRNA sequence.
JR612226.1:938-957
TCGCTGTAAATCGCCTTGTCTGTTCCCGTG938GCTTTCCAGTAACCCGACACGGTTGCCCGATTCGGGCGTATCCCGTTCGG
TSA: Pyrus communis mRNA, contig: lc2018.
FX610605.1:652-671
CCGAACGGGATACGCCCGAATCGGGCAACC652GTGTCGGGTTACTGGAAAGCCACGGGAACAGACAAGGCGATTTACAGCGA
TSA: Pyrus communis mRNA, contig: lc47999.
FX654373.1:85-104
CCGAACGGGATACGCCCGAATCGGGCAACC85GTGTCGGGTTACTGGAAAGCCACGGGAACAGACAAGGCGATTTACAGCGA
TSA: Nothofagus nervosa isotig01256 mRNA sequence.
JT782815.1:92-111
CCAAATGGGGCGCGGCCAAACAGAGCAACG92GTGTCGGGTTACTGGAAAGCCACAGGCACGGATAAGGCTATCCATAGCGG
Malus hybrid cultivar cultivar Flame chromosome 16.
CP141925.1:4372352-4372371
CCGAACGGGATACGCCCGAATCGGGCAACC4372352GTGTCGGGTTACTGGAAAGCCACGGGAACAGACAAGGCGATTTACAGCGA
Malus hybrid cultivar cultivar SH6 chromosome 16.
CP143390.1:4375660-4375679
CCGAACGGGATACGCCCGAATCGGGCAACC4375660GTGTCGGGTTACTGGAAAGCCACGGGAACAGACAAGGCGATTTACAGCGA
Malus hupehensis NAC domain protein (NAC120) mRNA, complete cds.
KF198127.1:256-275
CCGAACGGGATACGCCCGAATCGGGCAACC256GTGTCGGGTTACTGGAAAGCCACGGGAACAGACAAGGCGATTTACAGCGA
Buxus sempervirens genome assembly, chromosome: 4.
OX387185.1:46963345-46963364
CCAAATGGGGTGCGACCGAATCGAGCCGCC46963345GTGTCGGGTTACTGGAAAGCTACAGGCACAGATAAGGCAATCCACAGTGG
Crataegus laevigata genome assembly, chromosome: 11.
OY756948.1:4814863-4814882
CCGAACGGGGTCCGCCCGAATCGGGCAACC4814863GTGTCGGGTTACTGGAAAGCCACAGGAACAGACAAGGCGATCTACAGCGA
Pyrus communis genome assembly, chromosome: 4.
OY757071.1:3963035-3963054
CCGAACGGGATACGCCCGAATCGGGCAACC3963035GTGTCGGGTTACTGGAAAGCCACGGGAACAGACAAGGCGATTTACAGCGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCTTTCCAGTAACCCGACAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCTTTCCAGTAACCCGACAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.361 | 0.352 | search_plus_done; http://172.18.8.135:50400/match?q=GCTTTCCAGTAACCCGACAC&k=0&no_gap=0&offset=0&limit=50
0.465 | 0.104 | search_minus_done; http://172.18.8.135:50400/match?q=GTGTCGGGTTACTGGAAAGC&k=0&no_gap=0&offset=0&limit=45
0.471 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).