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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-06 17:37:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

CH216-15H21_Sp6.1 CH216 Xenopus tropicalis genomic clone CH216-15H21, genomic survey sequence.
CL022912.1:736-755
AGCATTAGTTTTGTGAAACTGTTACTGCTT736GCTTTGACAAGCCTTTAGGCCACTAAGGGGAGTTTGTATGGTTGGGCAGA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS004O21, complete sequence.
AC189637.2:111947-111966
CTCATCTACTCCGTATTAAATATTACGGGA111947GCTTTGACAAGCCTTTAGGCCGATTCTTAAGGGATAATCTCTTTGATCAG
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:2293111-2293130
CTCATCTACTCCGTATTAAATATTACGGGA2293111GCTTTGACAAGCCTTTAGGCCGATTCTTAAGGGATAATCTCTTTGATCAG
Brassica napus genome assembly, chromosome: A01.
HG994355.1:2235659-2235678
CTCATCTACTCCGTATTAAATATTACGGGA2235659GCTTTGACAAGCCTTTAGGCCGATTCTTAAGGGATAATCTCTTTGATCAG
Brassica napus genome assembly, chromosome: C01.
HG994365.1:2844760-2844779
CTCATCTACTCCGTATTAAATACTATGGGA2844760GCTTTGACAAGCCTTTAGGCCGATTCTTAAGGGATAATCTCTTTGATCAG
Brassica rapa genome, scaffold: A01.
LR031571.1:2226281-2226300
CTCATCTACTCCGTATTAAATATTACGGGA2226281GCTTTGACAAGCCTTTAGGCCGATTCTTAAGGGATAATCTCTTTGATCAG
Raphanus sativus genome assembly, chromosome: 5.
LR778314.1:2388751-2388770
CTCATCTACTCCGTATTAAATACTATGGGA2388751GCTTTGACAAGCCTTTAGGCCGATTCTTAAGGGATAATCTCTTTGATCAG
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:2226404-2226423
CTCATCTACTCCGTATTAAATATTACGGGA2226404GCTTTGACAAGCCTTTAGGCCGATTCTTAAGGGATAATCTCTTTGATCAG
TSA: Raphanus sativus var. sativus RNA, contig: WG3_1569.
FX658276.1:2875-2894
CTGATCAAAGAGATTATCCCTTAAGAATCG2875GCCTAAAGGCTTGTCAAAGCTCCCATAGTATTTAATACGGAGTAGATGAG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_2958.
FX691754.1:2849-2868
CTGATCAAAGAGATTATCCCTTAAGAATCG2849GCCTAAAGGCTTGTCAAAGCTCCCGTAATATTTAATACGGAGTAGATGAG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_3663.
FX730376.1:427-446
CTGATCAAAGAGATTATCCCTTAAGAATCG427GCCTAAAGGCTTGTCAAAGCTCCCATAGTATTTAATACGGAGTAGATGAG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_32053.
FX731269.1:94-113
CTGATCAAAGAGATTATCCCTTAAGAATCG94GCCTAAAGGCTTGTCAAAGCTCCCGTAATATTTAATACGGAGTAGATGAG
Brassica rapa subsp. pekinensis clone KBrH055H09, complete sequence.
CU695303.1:118031-118050
CTGATCAAAGAGATTATCCCTTAAGAATCG118031GCCTAAAGGCTTGTCAAAGCTCCCGTAATATTTAATACGGAGTAGATGAG
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:54256676-54256695
CTGATCAAAGAGATTATCCCTTAAGAATCG54256676GCCTAAAGGCTTGTCAAAGCTCCCATAGTATTTAATACGGAGTAGATGAG
Raphanus sativus genome assembly, chromosome: 2.
OY743208.1:41229385-41229404
CTGATCAAAGAGATTATCCCTTAAGAATCG41229385GCCTAAAGGCTTGTCAAAGCTCCCATAGTATTTAATACGGAGTAGATGAG
Dicrocoelium dendriticum genome assembly, scaffold: DDEL_scaffold0111628.
LK511312.1:768-787
ATTGAATGTATGTCTGCTCAGAAAAACAGA768GCCTAAAGGCTTGTCAAAGCGTTTCCCATGTGGGTAAAAACTAACTCGAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCTTTGACAAGCCTTTAGGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCTTTGACAAGCCTTTAGGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.141 | 0.132 | search_plus_done; http://172.18.8.135:50400/match?q=GCTTTGACAAGCCTTTAGGC&k=0&no_gap=0&offset=0&limit=50
0.191 | 0.050 | search_minus_done; http://172.18.8.135:50400/match?q=GCCTAAAGGCTTGTCAAAGC&k=0&no_gap=0&offset=0&limit=42
0.196 | 0.005 | cgi_end;

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