GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-15 05:12:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

RR3AT86JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EV545578.1:211-232
TGATTGCAGTGCGTATGCAGTTTATGCGGT211GCTTTGCAAGTAGTGGCAGTGAAGCTAGATGCCTTGAGAGTCTTGCCATTTC
RS3CB51JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
EX908549.1:539-560
TGATTGCAGTGCGTATGCAGTTTATGCGGT539GCTTTGCAAGTAGTGGCAGTGAAGCTAGATGCCTTGAGAGTCTTGCCATTTC
RR4DD58JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EY918264.1:597-618
TGATTGCAGTGCGTATGCAGTTTATGCGGT597GCTTTGCAAGTAGTGGCAGTGAAGCTAGA
RS2EC72JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EY936626.1:602-623
TGATTGCAGTGCGTATGCAGTTTATGCGGT602GCTTTGCAAGTAGTGGCAGTGAA
RS2EY39JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
FD573342.1:458-479
TGATTGCAGTGCGTATGCAGTTTATGCGGT458GCTTTGCAAGTAGTGGCAGTGAAGCTAGATGCCTTGAGAGCCTTGCCATTTC
TSA: Raphanus sativus var. sativus RNA, contig: WG3_10330.
FX658691.1:562-583
TGATTGCAGTGCGTATGCAGTTTATGCGGT562GCTTTGCAAGTAGTGGCAGTGAAGCTAGATGCCTTGAGAGTCTTGCCATTTC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_28882.
FX763012.1:577-598
TGATTGCAGTGCGTATGCAGTTTATGCGGT577GCTTTGCAAGTAGTGGCAGTGAAGCTAGATGCCTTGAGAGTCTTGCCATTTC
TSA: Raphanus sativus RS00742 mRNA sequence.
JT785289.1:519-540
TGATTGCAGTGCGTATGCAGTTTATGCGGT519GCTTTGCAAGTAGTGGCAGTGAAGCTAGATGCCTTGAGAGTCTTGCCATTTC
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:44582463-44582484
TGATTGCAGTGCGTATGCAGTTTATGCGGT44582463GCTTTGCAAGTAGTGGCAGTGAAGCTAGATGCCTTGAGAGTCTTGCCATTTC
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:44582463-44582484
TGATTGCAGTGCGTATGCAGTTTATGCGGT44582463GCTTTGCAAGTAGTGGCAGTGAAGCTAGATGCCTTGAGAGTCTTGCCATTTC
RR3AT86TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV550259.1:570-591
GAAATGGCAAGACTCTCAAGGCATCTAGCT570TCACTGCCACTACTTGCAAAGCACCGCATAAACTGCATACGCACTGCAATCA
RS1AC08TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EW714590.1:263-284
GAAATGGCAAGACTCTCAAGGCATCTAGCT263TCACTGCCACTACTTGCAAAGCACCGCATAAACTGCATACGCACTGCAATCA
RS3CB51TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EX904698.1:247-268
GAAATGGCAAGACTCTCAAGGCATCTAGCT247TCACTGCCACTACTTGCAAAGCACCGCATAAACTGCATACGCACTGCAATCA
RR4DD58TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EY922270.1:313-334
GAAATGGCAAGACTCTCAAGGCATCTAGCT313TCACTGCCACTACTTGCAAAGCACCGCATAAACTGCATACGCACTGCAATCA
RS2EY39TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD569076.1:264-285
GAAATGGCAAGGCTCTCAAGGCATCTAGCT264TCACTGCCACTACTTGCAAAGCACCGCATAAACTGCATACGCACTGCAATCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCTTTGCAAGTAGTGGCAGTGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCTTTGCAAGTAGTGGCAGTGA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.410 | 0.401 | search_plus_done; http://172.18.8.135:50400/match?q=GCTTTGCAAGTAGTGGCAGTGA&k=0&no_gap=0&offset=0&limit=50
0.787 | 0.377 | search_minus_done; http://172.18.8.135:50400/match?q=TCACTGCCACTACTTGCAAAGC&k=0&no_gap=0&offset=0&limit=40
0.791 | 0.004 | cgi_end;

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