GGGenome | Results

2025-04-08 19:37:00, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

EG-E11_008_E12 embsomSSHE1, Early somatic embryos (SSH) BAP/no BAP Elaeis guineensis cDNA clone EG-E11_008_E12, mRNA sequence.
JK669210.1:181-200

CAAACCTCCTTGTGGGCATAGGTCCCTGGG181GGAACACACCTGCACTTGAAACAACACTTCTGGCAGAAGAACATGCATGG

TSA: Musa acuminata AAA Group Unigene68440_B1 mRNA sequence.
JV317205.1:79-98

CAAACCTCCTTGTGTGCATAGGTTCCTGGA79GGAACACACCTGCACTTGAAGCAGCACTTCTGGCAGAAGAACAAGCAGGG

Musa acuminata subsp. malaccensis isolate AA chromosome 6.
CP126375.1:768474-768493

CAAACCTCCTTGTGTGCATAGGTTCCTGGA768474GGAACACACCTGCACTTGAAGCAGCACTTCTGGCAGAAGAACAAGCAGGG

Musa acuminata subsp. malaccensis isolate AA chromosome 17.
CP126386.1:768476-768495

CAAACCTCCTTGTGTGCATAGGTTCCTGGA768476GGAACACACCTGCACTTGAAGCAGCACTTCTGGCAGAAGAACAAGCAGGG

Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A06.
HG996471.1:756830-756849

CAAACCTCCTTGTGTGCATAGGTTCCTGGA756830GGAACACACCTGCACTTGAAGCAGCACTTCTGGCAGAAGAACAAGCAGGG

Musa schizocarpa genome assembly, chromosome: S06.
LS990921.1:740840-740859

CAAACCTCCTTGTGTGCATAGGTTCCTGGA740840GGAACACACCTGCACTTGAAGCAGCACTTCTGGCAGAAGAACAAGCAGGG

Hipparchia semele genome assembly, chromosome: 13.
OW121721.1:1550367-1550386

AGTTGTGGAGTAAAACTTTAAATTGTTTGA1550367GGAACACACCTGCACTTGAATTCTACTTGACGTGAAAACGTGAATACATA

Felis catus Senzu DNA, chromosome: B1, American Shorthair breed.
AP023155.1:121611069-121611088

TTCATTGCAACTAACAAAAAGTCCAAATAG121611069TTCAAGTGCAGGTGTGTTCCCAGTGGTTTGTGGCTAAAGGACACTGACAG

EG-A11_009_G02 Oil palm abnormal apex Lambda Zap Library Elaeis guineensis cDNA, mRNA sequence.
CN600307.1:232-251

CCATGCATGTTCTTCTGCCAGAAGTGTTGT232TTCAAGTGCAGGTGTGTTCCCCCAGGGACCTATGCCCACAAGGAGGTTTG

OPMF01376 Elaeis guineensis mature flower 26 cm Elaeis guineensis cDNA clone 5-E01-T3.seq, mRNA sequence.
EL685136.1:238-257

CCATGCATGTTCTTCTGCCAGAAGTGTTGT238TTCAAGTGCAGGTGTGTTCCCCCAGGGACCTATGCCCACAAGGAGGTTTG

OPSC00999 Elaeis guineensis Suspension cell cultures Elaeis guineensis cDNA clone 195-E8-T3.seq, mRNA sequence.
EL689225.1:238-257

CCATGCATGTTCTTCTGCCAGAAGTGTTGT238TTCAAGTGCAGGTGTGTTCCCCCAGGGACCTATGCCCACAAGGAGGTTTG

pOP-EO02188_EST_C_1_pSK_SK EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO02188 5', mRNA sequence.
EY409903.1:244-263

CCATGCATGTTCTTCTGCCAGAAGTGTTGT244TTCAAGTGCAGGTGTGTTCCCCCAGGGACCTATGCCCACAAGGAGGTTTG

EST0004 Lilium regale Wils Flower full-length cDNA Library Lilium regale cDNA 3', mRNA sequence.
GD254342.1:278-297

GCCTGCATGTTCTTCTGCCAGAACTGCTGC278TTCAAGTGCAGGTGTGTTCCTCCGGGGACTTGGGCACATAAGGAGGTATG

Elaeis guineensis EST, clone (6lib)_isotig39548.
LM635403.1:231-250

CCATGCATGTTCTTCTGCCAGAAGTGTTGT231TTCAAGTGCAGGTGTGTTCCCCCAGGGACCTATGCCCACAAGGAGGTTTG

TSA: Elaeis guineensis isotig07551.Elguifruit mRNA sequence.
JO094786.1:124-143

CCATGCATGTTCTTCTGCCAGAAGTGTTGT124TTCAAGTGCAGGTGTGTTCCCCCAGGGACCTATGCCCACAAGGAGGTTTG

Canna indica chromosome 8.
CP136897.1:70357558-70357577

CCCTGCCTGTTCTTCTGTCAGCAGTGTTGC70357558TTCAAGTGCAGGTGTGTTCCTCCAGGTACCTATGCCCACAAGGAGGTCTG

Melanargia galathea genome assembly, chromosome: 2.
OV049856.1:31578790-31578809

TATGGATGCAAGTTCTCCCGTCAAGTAGAA31578790TTCAAGTGCAGGTGTGTTCCTCGAACAATTTAAAGTTTTACTTCACTACT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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Debug Info:

0.008 | 0.008 | search_start;
0.215 | 0.207 | search_plus_done; http://172.18.8.135:50400/match?q=GGAACACACCTGCACTTGAA&k=0&no_gap=0&offset=0&limit=50
0.602 | 0.387 | search_minus_done; http://172.18.8.135:50400/match?q=TTCAAGTGCAGGTGTGTTCC&k=0&no_gap=0&offset=0&limit=43
0.608 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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