GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-12 00:27:55, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a006N05_SP6.
AM385894.1:49-68
TAAATAGAGTCTGCATTAGGCAAAAGAAGA49GGAACCAACACATACACACGATGTTTCACACAAGTAGTTGTAGTAGTAGT
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a018L19_SP6.
AM387724.1:47-66
TAAATAGAGTCTGCATTAGGCAAAAGAAGA47GGAACCAACACATACACACGATGTTTCACACAAGTAGTTGTAGTAGTAGT
OL2095F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL2095, mRNA sequence.
EH415933.1:16-35
TTAGGCAAAAGAAGA16GGAACCAACACATACACACGATGTTTCACACAAGTAGTTGTAGTAGTAGT
0123667 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV118355.1:102-121
AAATAGAGTCTGCATGTAGGCAAAAGAAGA102GGAACCAACACATACACACGATGTTTCACACAAGTACTAGTATAGTACAT
0164926 Brassica napus Flower Brassica napus cDNA, mRNA sequence.
EV131909.1:84-103
TAAATAGAGTCTGCATTAGGCAAAAGAAGA84GGAACCAACACATACACACGATGTTTCACACAAGTACTAGTATAGTACAT
0145025 Brassica napus Etiolated seedlings (Uni-ZAP) Brassica napus cDNA, mRNA sequence.
EV168050.1:145-164
TAAATAGAGTCGTCATTATGCAAAAGAAGA145GGAACCAACACATACACACGATGTTTCACACAAGTACTAGTATAGTACAT
0135475 Brassica napus Root - drought Brassica napus cDNA, mRNA sequence.
EV220367.1:38-57
TATAATGAGTCTGCATTAGGCAAATCAAGA38GGAACCAACACATACACACGATGTTTCACACAAGTACTAGTATAGTACAT
0137475 Brassica napus Root - drought Brassica napus cDNA, mRNA sequence.
EV222050.1:100-119
TAAATAGAGTCTGCATTAGGCAAAAGAAGA100GGAACCAACACATACACACGATGTTTCACACAAGTACTAGTATAGTACAT
0109434 Brassica napus Damaged cotyledons Brassica napus cDNA, mRNA sequence.
EV227508.1:149-168
TAAATACCGTCTGCATTAGGCAAAAGAAGA149GGAACCAACACATACACACGATGTTTCACACAAGTACTAGTATAGTACAT
BR008593 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-001A03 5', mRNA sequence.
EX023949.1:31-50
ATAATAGAGTCTGCATTAGGCAAAAGAAGA31GGAACCAACACATACACACGATGTTTCACACAAGTAGTAGTAGTAGTAGT
BR009040 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-007E11 5', mRNA sequence.
EX024396.1:27-46
TAGAGTCTGCATTAGGCAAAAGAAGA27GGAACCAACACATACACACGATGTTTCACACAAGTAGTAGTAGTAGTAGT
BR012616 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-054D05 5', mRNA sequence.
EX027972.1:30-49
TAATAGAGTCTGCATTAGGCAAAAGAAGA30GGAACCAACACATACACACGATGTTTCACACAAGTAGTAGTAGTAGTAGT
BR013122 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-061H05 5', mRNA sequence.
EX028478.1:30-49
TAATAGAGTCTGCATTAGGCAAAAGAAGA30GGAACCAACACATACACACGATGTTTCACACAAGTAGTAGTAGTAGTAGT
BR013205 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-063B02 5', mRNA sequence.
EX028561.1:34-53
ATAATAGAGTCTGCATTAGGCAAAAGAAGA34GGAACCAACACATACACACGATGTTTCACACAAGTAGTAGTAGTAGTAGT
BR014980 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-088G01 5', mRNA sequence.
EX030336.1:27-46
TAGAGTCTGCATTAGGCAAAAGAAGA27GGAACCAACACATACACACGATGTTTCACACAAGTAGTAGTAGTAGTAGT
BR018839 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-152G01 5', mRNA sequence.
EX034195.1:30-49
TAATAGAGTCTGCATTAGGCAAAAGAAGA30GGAACCAACACATACACACGATGTTTCACACAAGTAGTAGTAGTAGTAGT
BR060762 root cDNA library KBRT Brassica rapa subsp. pekinensis cDNA clone KBRT-050B06 5', mRNA sequence.
EX076118.1:56-75
TAAATAGAGTCTGCATTAGGCAAAAGAAGA56GGAACCAACACATACACACGATGTTTCACACAAGTAGTAGTAGTAGTAGT
BR063198 silique cDNA library KBSP Brassica rapa subsp. pekinensis cDNA clone KBSP-020F09 5', mRNA sequence.
EX078554.1:28-47
ATAGAGTCTGCATTAGGCAAAAGAAGA28GGAACCAACACATACACACGATGTTTCACACAAGTAGTAGTAGTAGTAGT
BR069926 primary inflorescence cDNA library KBST Brassica rapa subsp. pekinensis cDNA clone KBST-19B04 5', mRNA sequence.
EX085282.1:106-125
TAAATAGAGTCTGCATTAGGCAAAAGAAGA106GGAACCAACACATACACACGATGTTTCACACAAGTAGTAGTAGTAGTAGT
BR102147 cotyledon cDNA library KHCT Brassica rapa subsp. pekinensis cDNA clone KHCT-12G02 5', mRNA sequence.
EX118317.1:65-84
TAAATAGAGTCTGCATTAGGCAAAAGAAGA65GGAACCAACACATACACACGATGTTTCACACAAGTAGTAGTAGTAGTAGT
BR123267 primary leaf cDNA library KLPS Brassica rapa subsp. pekinensis cDNA clone KLPS-13C06 5', mRNA sequence.
EX139437.1:50-69
TAAATAGAGTCTGCATTAGGCAAAAGAAGA50GGAACCAACACATACACACGATGTTTCACACAAGTAGTAGTAGTAGTAGT
BR124603 primary leaf cDNA library KLPS Brassica rapa subsp. pekinensis cDNA clone KLPS-33E06 5', mRNA sequence.
EX140773.1:45-64
TAAATAGAGTCTGCATTAGGCAAAAGAAGA45GGAACCAACACATACACACGATGTTTCACACAAGTAGTAGTAGTAGTAGT
0233605 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO915376.1:45-64
GACAACAGAGTCTGCGTGATGCAAAGAAGA45GGAACCAACACATACACACGATGTTTGCAGACAAGTAGTAGTAGACTAGT
0257973 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO921468.1:145-164
ACAAACAGAGTCTGCATTAGGCAAAGAAGA145GGAACCAACACATACACACGATGTTTCAGACAAGTAGTAGTAGACTAGTA
0247347 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO943935.1:164-183
ACAAACAGAGTCTGCATTAGGCAAAGAAGA164GGAACCAACACATACACACGATGTTTCAGACAAGTAGTAGTAGACTAGTA
Sequence 348 from patent US 8426682.
GZ836129.1:743-762
ACTACTACTACTACTACTTGTGTGAAACAT743CGTGTGTATGTGTTGGTTCCTCTTCTTTGCCTAATGCAGACTCTGTTTGT
Sequence 359 from patent US 8426682.
GZ836140.1:1000-1019
ACTACTACTACAACTACTTGTGTGAAACAT1000CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
Sequence 370 from patent US 8426682.
GZ836151.1:1003-1022
ACTACTACTACTACTACTTGTGTGAAACAT1003CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
Sequence 401 from patent US 8426682.
GZ836182.1:1023-1042
ATGTACTATACTAGTACTTGTGTGAAACAT1023CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
Sequence 348 from Patent WO2009083958.
HB465627.1:743-762
ACTACTACTACTACTACTTGTGTGAAACAT743CGTGTGTATGTGTTGGTTCCTCTTCTTTGCCTAATGCAGACTCTGTTTGT
Sequence 359 from Patent WO2009083958.
HB465638.1:1000-1019
ACTACTACTACAACTACTTGTGTGAAACAT1000CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
Sequence 370 from Patent WO2009083958.
HB465649.1:1003-1022
ACTACTACTACTACTACTTGTGTGAAACAT1003CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
Sequence 401 from Patent WO2009083958.
HB465680.1:1023-1042
ATGTACTATACTAGTACTTGTGTGAAACAT1023CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
Sequence 348 from patent US 9670501.
KH775769.1:743-762
ACTACTACTACTACTACTTGTGTGAAACAT743CGTGTGTATGTGTTGGTTCCTCTTCTTTGCCTAATGCAGACTCTGTTTGT
Sequence 359 from patent US 9670501.
KH775780.1:1000-1019
ACTACTACTACAACTACTTGTGTGAAACAT1000CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
Sequence 370 from patent US 9670501.
KH775791.1:1003-1022
ACTACTACTACTACTACTTGTGTGAAACAT1003CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
Sequence 401 from patent US 9670501.
KH775822.1:1023-1042
ATGTACTATACTAGTACTTGTGTGAAACAT1023CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
Sequence 348 from patent US 10407690.
MO361931.1:743-762
ACTACTACTACTACTACTTGTGTGAAACAT743CGTGTGTATGTGTTGGTTCCTCTTCTTTGCCTAATGCAGACTCTGTTTGT
Sequence 359 from patent US 10407690.
MO361942.1:1000-1019
ACTACTACTACAACTACTTGTGTGAAACAT1000CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
Sequence 370 from patent US 10407690.
MO361953.1:1003-1022
ACTACTACTACTACTACTTGTGTGAAACAT1003CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
Sequence 401 from patent US 10407690.
MO361984.1:1023-1042
ATGTACTATACTAGTACTTGTGTGAAACAT1023CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE01a008H02_SP6.
AM058559.1:309-328
ACTACTACTACAACTACTTGTGTGAAACAT309CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE01a013B23_SP6.
AM059810.1:168-187
ACTACTACTACAACTACTTGTGTGAAACAT168CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE01a019A03_SP6.
AM061500.1:301-320
ACTACTACTACAACTACTTGTGTGAAACAT301CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
HC0625 GIBCOBRL CAT. NO. 19643-014 Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
CA992158.1:518-537
ACTACTACTACTACTACTTGTGTGAAACAT518CGTGTGTATGTGTTGGTTCCTCTCTTTTGCCTAATGCA
Brassica oleracea var. viridis mRNA, clone: KALE-016C15, 3' end sequence.
DK521343.1:677-696
ATGTACTATACTAGTACTTGTGTGAAACAT677CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
HC1249 GIBCOBRL CAT. NO. 19643-014 Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN191436.1:141-160
ACTACTACTACTACTACTTGTGTGAAACAT141CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
HC1580 GIBCOBRL CAT. NO. 19643-014 Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN192520.1:385-404
ACTACTACTACTACTACTTGTGTGAAACAT385CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
BNSCSICT_UP_029_C02_22DEC2004_012 Brassica napus seed coat BNSCSICT Brassica napus cDNA 5', mRNA sequence.
DY011649.1:705-724
ATGTACTATACTAGTACTTGTGTGAAACAT705CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCTAAT
15ACDHYS_UP_016_C02_14OCT2004_012 Brassica napus 15ACDHYS Brassica napus cDNA 5', mRNA sequence.
EE401318.1:415-434
ATGTACTATACTAGTACTTGTGTGAAACAT415CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
BNSCS3CT_UP_015_E12_10JAN2005_088 Brassica napus seed coat BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EE466157.1:412-431
ATGTACTATACTAGTACTTGTGTGAAACAT412CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
BNSCS3CT_UP_020_C08_11JAN2005_060 Brassica napus seed coat BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EE466527.1:418-437
ATGTACTATACTAGTACTTGTGTGAAACAT418CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
BNSCS3CT_UP_031_B11_12JAN2005_093 Brassica napus seed coat BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EE467302.1:465-484
ATGTACTATACTAGTACTTGTGTGAAACAT465CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
BNSCS4CT_UP_029_A01_19JAN2005_015 Brassica napus seed coat BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EE469819.1:186-205
ATGTACTATACTAGTACTTGTGTGAAACAT186CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
BNQA_UP_075_D09_31MAY2005_073 Brassica napus BNQA Brassica napus cDNA 5', mRNA sequence.
EE552520.1:187-206
ATGTACTATACTAGTACTTGTGTGAAACAT187CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
BNQA_UP_093_G02_01JUN2005_004 Brassica napus BNQA Brassica napus cDNA 5', mRNA sequence.
EE553628.1:15-34
CTTGTGTGAAACAT15CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
OL2369R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL2369, mRNA sequence.
EH416481.1:539-558
ACTACTACTACAACTACTTGTGTGAAACAT539CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
OL2926R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL2926, mRNA sequence.
EH417606.1:520-539
ACTACTACTACAACTACTTGTGTGAAACAT520CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTN
OL8520R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL8520, mRNA sequence.
EH428215.1:305-324
ACTACTACTACAACTACTTGTGTGAAACAT305CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
BNARO5GH_T3_002_A05_29NOV2006_047 Brassica napus BNARO5GH Brassica napus cDNA 5', mRNA sequence.
ES907634.1:513-532
ATGTACTATACTAGTACTTGTGTGAAACAT513CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
24RDBNH_UP_167_H08_14DEC2006_050 Brassica napus 24RDBNH Brassica napus cDNA 5', mRNA sequence.
ES921536.1:240-259
ATGTACTATACTAGTACTTGTGTGAAACAT240CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
BNQA_UP_090_F11_01JUN2005_085 Brassica napus BNQA Brassica napus cDNA 5', mRNA sequence.
ES965093.1:34-53
ATGTACTATACTAGTACTTGTGTGAAACAT34CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
BNAEN3GH_UP_026_E05_01SEP2006_039 Brassica napus BNAEN3GH Brassica napus cDNA 5', mRNA sequence.
ES994626.1:333-352
ATGTACTATACTAGTACTTGTGTGAAACAT333CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
BNAEN3GH_UP_196_G06_26NOV2006_036 Brassica napus BNAEN3GH Brassica napus cDNA 5', mRNA sequence.
EV006035.1:208-227
ATGTACTATACTAGTACTTGTGTGAAACAT208CGTGTGTATGTGTTGGTTCCTCTACTTTTGCCTAATGCAGACTCTATTTA
BNSCS2CT_UP_195_B11_27APR2007_093 Brassica napus BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EV030014.1:552-571
ATGTACTATACTAGTACTTGTGTGAAACAT552CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTCA
BNSCS4CT_UP_142_A04_20MAY2007_032 Brassica napus BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EV069309.1:291-310
ATGTACTATACTAGTACTTGTGTGAAACAT291CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
Brassica rapa subsp. pekinensis clone KBrB088L15, complete sequence.
FP340620.1:64701-64720
ACTACTACTACTACTACTTGTGTGAAACAT64701CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
Brassica oleracea aquaporin PIP1b1 mRNA, complete cds.
AF299050.1:987-1006
ATGTACTATACTAGTACTTGTGTGAAACAT987CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
Brassica napus cultivar Xiang5A chromosome 6.
CP123881.1:5846438-5846457
ATGTACTATACTAGTACTTGTGTGAAACAT5846438CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
Brassica napus genome assembly, chromosome: C04.
HG994368.1:5577787-5577806
ATGTACTATACTAGTACTTGTGTGAAACAT5577787CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
Brassica oleracea HDEM genome, scaffold: C4.
LR031873.1:5475728-5475747
ATGTACTATACTAGTACTTGTGTGAAACAT5475728CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
B.oleracea mRNA for transmembrane channel protein (mipA).
X95639.1:988-1007
ATGTACTATACTAGTACTTGTGTGAAACAT988CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GGAACCAACACATACACACG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GGAACCAACACATACACACG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.697 | 1.688 | search_plus_done; http://172.18.8.135:50400/match?q=GGAACCAACACATACACACG&k=0&no_gap=0&offset=0&limit=50
3.646 | 1.950 | search_minus_done; http://172.18.8.135:50400/match?q=CGTGTGTATGTGTTGGTTCC&k=0&no_gap=0&offset=0&limit=25
3.677 | 0.031 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).