GGGenome | Results

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2025-04-07 00:42:53, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

TSA: Camellia sinensis Singletons114367.Casi mRNA sequence.
HP717101.1:205-224

CCGATTATAAAAAAATAACTCCTTTAACGA205GGAAGAGTGGGTGCGTGAAGCAAGATCAGCATCGTCGGAGA

Poecilus cupreus genome assembly, chromosome: 17.
OZ012730.1:10475304-10475323

GACACGTGCGCACGACACGTGAGGAAGCCA10475304GGAAGAGTGGGTGCGTGAAGTTGTCACTCTTCTAGTAAAATTACATTGCA

EST2320 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_25_27.M13+_C04.ab1, mRNA sequence.
GE651993.1:291-310

GATCGATCTTCTCCGACGATGCTGATCTTG291CTTCACGCACCCACTCTTCCTCGTTAAAGGGAGGTCGCCCCACCCTGGAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.113 | 0.104 | search_plus_done; http://172.18.8.135:50400/match?q=GGAAGAGTGGGTGCGTGAAG&k=0&no_gap=0&offset=0&limit=50
0.218 | 0.105 | search_minus_done; http://172.18.8.135:50400/match?q=CTTCACGCACCCACTCTTCC&k=0&no_gap=0&offset=0&limit=48
0.219 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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