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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 13:48:16, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Bufo bufo genome assembly, chromosome: 1.
LR991667.1:271415352-271415371
CAGAGTGGCAAGGTGACATAGTGGTGAGGT271415352GGAAGCTGCATGATGAGACCACAGAGTGGCCAAATCACAGAGTCTCTAGG
Avena insularis genome assembly, chromosome: 6D.
OU342350.1:32092885-32092904
AGTGTCCAAATCTTTCCCGTCAGGGGCTCA32092885GGAAGCTGCATGATGAGACCAAGAAACCACAAAGGGCAGCACATCAACAT
Avena sativa genome assembly, chromosome: 2D.
OU342393.1:30962311-30962330
AGTGTCCAAATCTTTCCCGTCAGGGGCTCA30962311GGAAGCTGCATGATGAGACCAAGAAACCACAAAGGGCAGCACATCAACAT
Avena sativa genome assembly, chromosome: 16.
OV702294.1:34184300-34184319
AGTGTCCAAATCTTTCCCGTCAGGGGCTCA34184300GGAAGCTGCATGATGAGACCAAGAAACCACAAAGGGCAGCACATCAACAT
Crataegus laevigata genome assembly, chromosome: 6.
OY756943.1:40704573-40704592
GGAAAAAGGACCACCTTTGTTAGTGTAAGA40704573GGAAGCTGCATGATGAGACCTTCTTTCTTCCACAGTGTAAAACAAGGTCT
Pyrus communis genome assembly, chromosome: 8.
OY757075.1:27318214-27318233
GGAAAAAGGACCTTCTTTGTTAGTGTAAGA27318214GGAAGCTGCATGATGAGACCTTCCTTCTTCCATTGTGTAAAACAAGGCCT
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:329412-329431
TCAAGGCCTTGTTTTACACTATGGAAGAAA329412GGTCTCATCATGCAGCTTCCTCTTACACTAACAAGGAAGTCCTTTTTCCA
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:397935-397954
AGGCCTTGTTTTACACTATGGACGAAAGAA397935GGTCTCATCATGCAGCTTCCTCTTACACTAACAAGGAAGTCCTTTTTCCA
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:375886-375905
AGGCCTTGTTTTACACTATGGACGAAAGAA375886GGTCTCATCATGCAGCTTCCTCTTACACTAACAAGGAAGTCCTTTTTCCA
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:349276-349295
AGGCCTTGTTTTACACTATGGACGAAAGAA349276GGTCTCATCATGCAGCTTCCTCTTACACTAACAAGGAAGTCCTTTTTCCA
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:335631-335650
AGGCCTTGTTTTACACTATGGACGAAAGAA335631GGTCTCATCATGCAGCTTCCTCTTACACTAACAAGGAAGTCCTTTTTCCA
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:315313-315332
AGGCCTTGTTTTACACTATGGAAGAAAGAA315313GGTCTCATCATGCAGCTTCCTCTTACACTAACAAAGAAGGTCCTTTTCCA
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:326142-326161
AGGCCTTGTTTTACACTACGGAAGAAAGAA326142GGTCTCATCATGCAGCTTCCTCTTACACTAACAAGGAAGTCCTTTTTCCA
Malus domestica genome assembly, chromosome: 11.
OU696687.1:341022-341041
AGGCCTTGTTTTACACTATGGACGAAAGAA341022GGTCTCATCATGCAGCTTCCTCTTACACTAACAAGGAAGTCCTTTTTCCA
Malus domestica genome assembly, chromosome: 11.
OU744552.1:370611-370630
AGGCCTTGTTTTACACTACGGAAGAAAGAA370611GGTCTCATCATGCAGCTTCCTCTTACACTAACAAGGAAGTCCTTTTTCCA
Malus domestica genome assembly, chromosome: 11.
OU744963.1:357965-357984
AGGCCTTGTTTTACACTATGGACGAAAGAA357965GGTCTCATCATGCAGCTTCCTCTTACACTAACAAGGAAGTCCTTTTTCCA
Malus domestica genome assembly, chromosome: 11.
OU745001.1:339847-339866
AGGCCTTGTTTTACACTATGGACGAAAGAA339847GGTCTCATCATGCAGCTTCCTCTTACACTAACAAGGAAGTCCTTTTTCCA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GGAAGCTGCATGATGAGACC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GGAAGCTGCATGATGAGACC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.273 | 0.265 | search_plus_done; http://172.18.8.135:50400/match?q=GGAAGCTGCATGATGAGACC&k=0&no_gap=0&offset=0&limit=50
0.366 | 0.093 | search_minus_done; http://172.18.8.135:50400/match?q=GGTCTCATCATGCAGCTTCC&k=0&no_gap=0&offset=0&limit=44
0.373 | 0.007 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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