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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:43:17, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Pyrus pyrifolia mRNA, clone: NFW2_10_02, 3' end sequence, expressed in flower.
HX743642.1:488-510
GCCAAGAAATGAACAACAAACATTAAGGAT488GGAAGTTGTGCTAGCAAAGAAGCTATGCATATTTGTTTGGTTACAGATCAATG
Pyrus pyrifolia mRNA, clone: NFW2_10_08, 3' end sequence, expressed in flower.
HX743646.1:383-405
GCCAAGAAATGAACAACAAACATTAAGGAT383GGAAGTTGTGCTAGCAAAGAAGCTATGCATATTTGTTTGGTTACAGATCAATG
Pyrus pyrifolia mRNA, clone: NLE1_06_04, 3' end sequence, expressed in leaf bud.
HX744595.1:103-125
GCCAAGAAATGAACAACAAACATTAAGGAT103GGAAGTTGTGCTAGCAAAGAAGCTATGCATATTTGTTTGGTTACAGATCAATG
Pyrus communis genome assembly, chromosome: 3.
OY757070.1:27495896-27495918
GCCAAGAAATGAACAACAAACATTAAGGAT27495896GGAAGTTGTGCTAGCAAAGAAGCTATGCATATTTGTTTGGTTACAGATCAATG
Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH009_02002m, 5' end sequence.
AB450697.1:143-165
CATTGATCTGTAACCAAACAAATATGCATA143GCTTCTTTGCTAGCACAACTTCCATCCTTAATGTTTGTTGTTCATTTCTTGGC
Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH029_07004m, 5' end sequence.
AB450710.1:465-487
CATTGATCTGTAACCAAACAAATATGCATA465GCTTCTTTGCTAGCACAACTTCCATCCTTAATGTTTGTTGTTCATTTCTTGGC
SPFV37 Supression Substractive Hybridization cDNA library of pear inoculated with Venturia nashicola Pyrus x bretschneideri cDNA, mRNA sequence.
GO924834.1:351-373
CATTGATCTGTAACCAAACAAATATGCATA351GCTTCTTTGCTAGCACAACTTCCATCCTTAATGTTTGTTGTTCATTTTTTGGC
SPFV48 Supression Substractive Hybridization cDNA library of pear inoculated with Venturia nashicola Pyrus x bretschneideri cDNA, mRNA sequence.
GO924844.1:289-311
CATTGATCTGTAACCAAACAAATATGCATA289GCTTCTTTGCTAGCACAACTTCCATCCTTAATGTTTGTTGTTCATTTCTTGGC
Pyrus pyrifolia mRNA, clone: NFR1_09_76, 5' end sequence, expressed in fruit.
HX746393.1:55-77
CATTGATCTGTAACCAAACAAATATGCATA55GCTTCTTTGCTAGCACAACTTCCATCCTTAAT
Pyrus pyrifolia mRNA, clone: NFW2_10_02, 5' end sequence, expressed in flower bud.
HX762776.1:20-42
AACCAAACAAATATGCATA20GCTTCTTTGCTAGCACAACTTCCATCCTTAATGTTTGTTGTTCATTTCTTGGC
Pyrus pyrifolia mRNA, clone: NFW2_10_08, 5' end sequence, expressed in flower bud.
HX762782.1:64-86
CATTGATCTGTAACCAAACAAATANNCATA64GCTTCTTTGCTAGCACAACTTCCATCCTTAATGTTTGTTGTTCATTTCTTGGC
TSA: Pyrus pyrifolia mRNA, contig: contig_3392.
FX434104.1:77-99
CATTGATCTGTAACCAAACAAATATGCATA77GCTTCTTTGCTAGCACAACTTCCATCCTTAATGTTTGTTGTTCATTTCTTGGC
TSA: Pyrus x bretschneideri Unigene71887_XinShao mRNA sequence.
JR658062.1:84-106
CATTGATCTGTAACCAAACAAATATGCATA84GCTTCTTTGCTAGCACAACTTCCATCCTTAATGTTTGTTGTTCATTTCTTGGC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GGAAGTTGTGCTAGCAAAGAAGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GGAAGTTGTGCTAGCAAAGAAGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.427 | 0.418 | search_plus_done; http://172.18.8.135:50400/match?q=GGAAGTTGTGCTAGCAAAGAAGC&k=0&no_gap=0&offset=0&limit=50
1.143 | 0.716 | search_minus_done; http://172.18.8.135:50400/match?q=GCTTCTTTGCTAGCACAACTTCC&k=0&no_gap=0&offset=0&limit=46
1.149 | 0.006 | cgi_end;

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