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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-12-16 00:33:18, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Cucumis melo subsp. agrestis EST, clone A_19-G07-M13R.
AM727230.2:713-732
AGTGGAGCAGAAGCATTGATGAAGGTGGCC713GGAAGTTTGGCTTTGGGATGGGCTGCCGTCTCCG
Cucumis melo subsp. melo EST, clone CI_64-A07-M13R.
AM731995.2:717-736
AGTGGAGCAGAAGCATTGATGAAGGTGGCC717GGAAGTTTGGCTTTGGGATGGGCTGCCGTCGCCGTTAGCATTATCTTTTA
RG5_D07 Cucumber leaf Cucumis sativus cDNA, mRNA sequence.
CK085591.1:84-103
AGTGGAGCTGAAGCATTAATGAAGGTTGCC84GGAAGTTTGGCTTTGGGATGGGCTGCCGTCGCCGTCAGCATCATCTTTTA
csa01-1ms3-a12 Csa01 Cucumis sativus cDNA clone csa01-1ms3-a12 5', mRNA sequence.
CO995334.1:290-309
AGTGGAGCTGAAGCATTAATGAAGGTTGCC290GGAAGTTTGGCTTTGGGATGGGCTGCCGTCGCCGTCAGCATCATCTTTTA
csa01-3ms1-h03 Csa01 Cucumis sativus cDNA clone csa01-3ms1-h03 5', mRNA sequence.
CO998468.1:128-147
AGTGGAGCTGAAGCATTAATGAAGGTTGCC128GGAAGTTTGGCTTTGGGATGGGCTGCCGTCGCCGTCAGCATCATCTTTTA
EST11014164 CM-TEa library Cucumis melo cDNA clone TEa0001L23, mRNA sequence.
JG472451.1:666-685
AGTGGAGCAGAAGCATTGATGAAGGTGGCC666GGAAGTTTGGCTTTGGGATGGGCTGCCGTCGCCGTTAGCATTATCTTTTA
EST11069469 VFLP2 library Cucumis melo cDNA clone GA18YO11FM1, mRNA sequence.
JG527756.1:128-147
AGTGGAGCAGAAGCATTGATGAAGGTGGCC128GGAAGTTTGGCTTTGGGATGGGCTGCCGTCGCCGTTAGCATTATCTTTTA
EST11074529 VFLP2 library Cucumis melo cDNA clone GA21YH02FM1, mRNA sequence.
JG532816.1:717-736
AGTGGAGCAGAAGCATTGATGAAGGTGGCC717GGAAGTTTGGCTTTGGGATGGGCTGCCGTCGCCGTTAGCATTATCTTTTA
Macropus eugenii DNA with T7 primer, fosmid clone: MEFX-003I06, genomic survey sequence.
DH432352.1:212-231
GGTGCAACAGGCTTGACCCTGTGAACAGCA212GGAAGTTTGGCTTTGGGATGGAGGAGGCCACAGTCTTGTTTGAAATCCCC
Cucumis sativus mRNA for arabinogalactan protein, complete cds.
AB029092.2:702-721
AGTGGAGCTGAAGCATTAATGAAGGTTGCC702GGAAGTTTGGCTTTGGGATGGGCTGCCGTCGCCGTCAGCATCATCTTTTA
Cucumis sativus mRNA expressed in cucumber hypocotyls, complete cds.
AB029147.1:702-721
AGTGGAGCTGAAGCATTAATGAAGGTTGCC702GGAAGTTTGGCTTTGGGATGGGCTGCCGTCGCCGTCAGCATCATCTTTTA
Calliergon cordifolium genome assembly, chromosome: 1.
OZ209158.1:38440110-38440129
ACTGAACTGAAAAGGAAAGAAAAAGCATTG38440110GGAAGTTTGGCTTTGGGATGACAAGACGTTCCGCAAGTCTAGTGAAACTC
Acrocephalus scirpaceus scirpaceus genome assembly, chromosome: 26.
OU383799.1:1350916-1350935
GTTTTAGTCAAGTACGAAGAGGGGAAGGAT1350916GGAAGTTTGGCTTTGGGATGTTCAATTTGTAGGGCTGGGGAGCTTATTTG
Acrocephalus scirpaceus scirpaceus genome assembly, chromosome: 26.
OU383799.1:1351821-1351840
GTTTTAGTCAAGTACGAAGAGGGGAAGGAT1351821GGAAGTTTGGCTTTGGGATGCTCAGTTTGTAGGGCTGGGGATGTCTCTGG
Acrocephalus scirpaceus scirpaceus genome assembly, chromosome: 26.
OU383799.1:1352052-1352071
GTTTTAGTCAAGTTCGAAGAGGGGAAGGAT1352052GGAAGTTTGGCTTTGGGATGTTCAGTTTGTAGGGCTGGGGAGCTGATTTG
Acrocephalus scirpaceus scirpaceus genome assembly, chromosome: 26.
OU383799.1:1352552-1352571
GTTTTAGTCAAGTACGAGAAGGGAAAGGAT1352552GGAAGTTTGGCTTTGGGATGCTCAGTTTGTAGGGCTGGGGAGCTTATTTG
Acrocephalus scirpaceus scirpaceus genome assembly, chromosome: 26.
OU383799.1:1353230-1353249
TTTTTAGTTAAGTACGAGAAGGGAAAGGAT1353230GGAAGTTTGGCTTTGGGATGTTCAGTTTGTAGGGCTGGGGATGTCTCTGG
Acrocephalus scirpaceus scirpaceus genome assembly, chromosome: 26.
OU383799.1:1353866-1353885
GTTTTAGTCAAGTACGAAGAGGGGAAGGAT1353866GGAAGTTTGGCTTTGGGATGAGGCTTCTGGGGTGCTCAGTTTGTAGGGCT
Wallaby DNA sequence from clone XX-121C8.
CR385048.3:27801-27820
GGGGATTTCAAACAAGACTGTGGCCTCCTC27801CATCCCAAAGCCAAACTTCCTGCTGTTCACAGGGTCAAGCCTGTTGCACC
uncultured Hormoscilla sp. isolate 8e647e88-4706-4a17-b8b9-b52c092b67df genome assembly, chromosome: 2.
OZ001294.2:3022004-3022023
CTTCTCCGGCGGGAACCTCCTGCCCGGACT3022004CATCCCAAAGCCAAACTTCCGTTCCCTCAACCCCATATCCCGCAGGCACC
Cuc3_3_F02 Cucumber fruit development cDNA library Cucumis sativus cDNA, mRNA sequence.
DN910045.1:342-361
TAAAAGATGATGCTGACGGCGACGGCAGCC342CATCCCAAAGCCAAACTTCCGGCAACCTTCATTAATGCTTCAGCTCCACT
Cuc5_1_D09 Cucumber fruit development cDNA library Cucumis sativus cDNA, mRNA sequence.
DN910632.1:371-390
TAAAAGATGATGCTGACGGCGACGGCAGCC371CATCCCAAAGCCAAACTTCCGGCAACCTTCATTAATGCTTCAGCTCCACT
EST11013569 CM-TEa library Cucumis melo cDNA clone TEa0014H13, mRNA sequence.
JG471856.1:181-200
TAAAAGATAATGCTAACGGCGACGGCAGCC181CATCCCAAAGCCAAACTTCCGGCCACCTTCATCAATGCTTCTGCTCCACT
TSA: Cucumis sativus var. sativus cultivar Vlaspik CuSa200910_3038, mRNA sequence.
JW921207.1:390-409
TAAAAGATGATGCTGACGGCGACGGCAGCC390CATCCCAAAGCCAAACTTCCGGCAACCTTCATTAATGCTTCAGCTCCACT
Cucumis melo isolate PI 511890 chromosome 8.
CP136107.1:4036683-4036702
TAAAAGATAATGCTAACGGCGACGGCAGCC4036683CATCCCAAAGCCAAACTTCCGGCCACCTTCATCAATGCTTCTGCTCCACT
Citrullus colocynthis cultivar PI 537300 chromosome 4.
CP155343.1:30397020-30397039
TAGAAGATGAAGCTGACGGCGACGGCAGCC30397020CATCCCAAAGCCAAACTTCCGGCCACCTTCTGCAGGTTCCTCAATGTTTC
Citrullus colocynthis cultivar PI 525081 chromosome 4.
CP155354.1:30211947-30211966
TAGAAGATGAAGCTGACGGCGACGGCAGCC30211947CATCCCAAAGCCAAACTTCCGGCCACCTTCTGCAGGTTCCTCAATGTTTC
Citrullus naudinianus cultivar PI 596694M chromosome 4.
CP155365.1:27939435-27939454
TAGAAGATGAAGCTGACGGCGACGGCAGCC27939435CATCCCAAAGCCAAACTTCCGGCCACCTTCTGCAGGTTCCTCAACGTTTC
Citrullus colocynthis cultivar PI 652554 chromosome 4.
CP155376.1:28442386-28442405
TAGAAAATGAAGCTGACGGCGACGGCAGCC28442386CATCCCAAAGCCAAACTTCCGGCCACCTTCTGCAGGTTCCTCAATGTTTC
Citrullus colocynthis cultivar PI 632755 chromosome 4.
CP155387.1:30253081-30253100
TAGAAGATGAAGCTGACGGCGACGGCAGCC30253081CATCCCAAAGCCAAACTTCCGGCCACCTTCTGCAGGTTCCTCAATGTTTC
Citrullus rehmii cultivar PI 670011 chromosome 4.
CP155398.1:32314204-32314223
TAGAAGATGAAGCTGACGGCGACGGCAGCC32314204CATCCCAAAGCCAAACTTCCGGCCACCTTCTGCAGGTTCCTCAATGTTTC
Cucumis melo genomic scaffold, anchoredscaffold00007.
LN681875.1:4017145-4017164
TAAAAGATAATGCTAACGGCGACGGCAGCC4017145CATCCCAAAGCCAAACTTCCGGCCACCTTCATCAATGCTTCTGCTCCACT
Cucumis melo genomic chromosome, chr_8.
LN713262.1:4017145-4017164
TAAAAGATAATGCTAACGGCGACGGCAGCC4017145CATCCCAAAGCCAAACTTCCGGCCACCTTCATCAATGCTTCTGCTCCACT
Alisma plantago-aquatica genome assembly, chromosome: 1.
OY856409.1:938933571-938933590
ACTACTAAGAATTCACCTCCACCCCCACCA938933571CATCCCAAAGCCAAACTTCCACAGCATGTTGTCTCTCGCCCCCACATTAC
Citrullus colocynthis genome assembly, chromosome: 4.
OZ021738.1:28421568-28421587
TAGAAAATGAAGCTGACGGCGACGGCAGCC28421568CATCCCAAAGCCAAACTTCCGGCCACCTTCTGCAGGTTCCTCAATGTTTC
Chiton olivaceus genome assembly, chromosome: 5.
OZ183322.1:79937289-79937308
CTGTCGTAACTTTCCTCAGTGATCAAGTTC79937289CATCCCAAAGCCAAACTTCCATCCAAGGAATAATACAAGCAACAACAATG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GGAAGTTTGGCTTTGGGATG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GGAAGTTTGGCTTTGGGATG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.031 | 1.022 | search_plus_done; http://172.18.8.135:50800/match?q=GGAAGTTTGGCTTTGGGATG&k=0&no_gap=0&offset=0&limit=50
1.689 | 0.658 | search_minus_done; http://172.18.8.135:50800/match?q=CATCCCAAAGCCAAACTTCC&k=0&no_gap=0&offset=0&limit=32
1.701 | 0.012 | cgi_end;

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