GGGenome | Results

2025-04-26 22:51:18, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

EST sm4d02 - [Humulus lupulus] Humulus lupulus Male-Hermaphrodite differential cDNA Humulus lupulus cDNA clone sm4d02, mRNA sequence.
FG355975.1:413-436

TACAATTTCACGCTCAGCTGTGGTGGTGAA413GGAATAACCACGCTCAGTCAAGATTTTCATAAGGGCATCAGTCAGGTCACGACC

CCOY6378.g1 CCOY Avena barbata root, pooled from different levels of rain and nitrogen (L) Avena barbata cDNA clone CCOY6378 3', mRNA sequence.
GR365006.1:638-661

GACAATTTCGCGTTCAGCGGTGGTTGTGAA638GGAATAACCACGCTCAGTCAAGATCTTCATCAGGTAGTCAGTCAAGTCACGACC

Sequence 63 from patent US 10808260.
MV813438.1:1-24

1ATCTTGACTGAGCGTGGTTATTCC

Sequence 63 from patent US 10995342.
MX642773.1:1-24

1ATCTTGACTGAGCGTGGTTATTCC

se02g06.y1 Gm-c1013 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1013-2387 5' similar to SW:ACTB_SOLTU P30171 ACTIN 97. [1], mRNA sequence.
AW132335.1:62-85

GGTCGTGACCTCACAGATTTCTTGATGAAA62ATCTTGACTGAGCGTGGTTATTCCTTCACCACCTCAGCCGAGCGGGAAATTGTA

sl63h12.y1 Gm-c1027 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1027-6048 5' similar to SW:ACTB_SOLTU P30171 ACTIN 97. [1], mRNA sequence.
AW761157.1:211-234

GGTCGTGACCTCACAGATTTCTTGATGAAA211ATCTTGACTGAGCGTGGTTATTCCTTCACCACCTCAGCCGAGCGGGAAATTGTA

sl64f08.y1 Gm-c1027 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1027-6112 5' similar to SW:ACT3_SOLTU P30167 ACTIN 58. [1], mRNA sequence.
AW761214.1:170-193

GGTCGTGACCTCACAGATTTCTTGATGAAA170ATCTTGACTGAGCGTGGTTATTCCTTCACCACCTCAACCGAGCGGGAAATTGTA

sn09c11.y1 Gm-c1016 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1016-10989 5' similar to SW:ACTB_ARATH P53496 ACTIN 11. [1], mRNA sequence.
BE057950.1:61-84

GGTCGTGACCTCACAGATTTCTTGATGAAA61ATCTTGACTGAGCGTGGTTATTCCTTCACCACCTCAGCCGAGCGGGAAATTGTA

st27c09.y1 Gm-c1067 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1067-137 5' similar to SW:ACTB_SOLTU P30171 ACTIN 97, mRNA sequence.
BF066640.1:6-29

TGAAA6ATCTTGACTGAGCGTGGTTATTCCTTCACCACCTCAGCCGAGCGGGAAATTGTA

sai97h07.y1 Gm-c1065 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1065-9181 5' similar to SW:ACTB_SOLTU P30171 ACTIN 97, mRNA sequence.
BI974205.1:100-123

GGTCGTGACCTCACAGATTTCTTGATGAAA100ATCTTGACTGAGCGTGGTTATTCCTTCACCACCTCAGCCGAGCGGGAAATTGTA

sap65d01.y1 Gm-c1087 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1087-5522 5' similar to SW:ACTB_SOLTU P30171 ACTIN 97, mRNA sequence.
BQ611793.1:36-59

TGCCGAATTCGGCACGAGTTCTTGATGAAA36ATCTTGACTGAGCGTGGTTATTCCTTCACCACCTCAGCCGAGCGGGAAATTGTA

sar96g09.y1 Gm-c1074 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1074-10313 5' similar to SW:ACTB_SOLTU P30171 ACTIN 97, mRNA sequence.
BU762086.1:343-366

GGTCGTGACCTCACAGATTTCTTGATGAAA343ATCTTGACTGAGCGTGGTTATTCCTTCACCACCTCAGCCGAGCGGGAAATTGTA

gmrhRww24-05-T7_D02_1_010 Soybean root hair subtracted cDNA library gmrhRww24 Glycine max cDNA, mRNA sequence.
CF921952.1:131-154

GGTCGTGACCTCACAGATTTCTTGATGAAA131ATCTTGACTGAGCGTGGTTATTCCTTCACCACCTCAGCCGAGCGGGAAATTGTA

Glycine max cDNA, clone: GMFL02-07-F02, 5'end.
DB957723.1:298-321

GGTCGTGACCTCACAGATTTCTTGATGAAA298ATCTTGACTGAGCGTGGTTATTCCTTCACCACCTCAGCCGAGCGGGAAATTGTA

Glycine max cDNA, clone: GMFL02-15-D09, 5'end.
DB960529.1:298-321

GGTCGTGACCTCACAGATTTCTTGATGAAA298ATCTTGACTGAGCGTGGTTATTCCTTCACCACCTCAGCCGAGCGGGAAATTGTA

JC5_D04i Forward JC Glycine max cDNA 5', mRNA sequence.
DW246853.1:133-156

GGTCGTGACCTCACAGATTTCTTGATGAAA133ATCTTGACTGAGCGTGGTTATTCCTTCACCACCTCAGCCGAGCGGGAAATTGTA

Sl_SlB_07K11_T7 SLB Selaginella lepidophylla cDNA clone Sl_SlB_07K11 5' similar to UniRef90_P10987 Actin-5C related cluster. Score = 406 bits (1043), Expect = e-112, mRNA sequence.
EH092513.1:598-621

GGACGTGACTTGACTGACTACCTCATGAAG598ATCTTGACTGAGCGTGGTTATTCCTTCACCACCACCGCCG

JGI_ACBU2806.fwd ACBU Phakopsora pachyrhizi infected soybean leaf tissue 6-8 days post inoculation with TW72-1 urediniospores Glycine max cDNA clone ACBU2806 5', mRNA sequence.
EH258961.1:660-683

GGTCGTGACCTCACAGATTTCTTGATGAAA660ATCTTGACTGAGCGTGGTTATTCCTTCACCACCTCAGCCGAGCGGGAAA

JGI_ACBU5780.fwd ACBU Phakopsora pachyrhizi infected soybean leaf tissue 6-8 days post inoculation with TW72-1 urediniospores Glycine max cDNA clone ACBU5780 5', mRNA sequence.
EH261658.1:641-664

GGTCGTGACCTCACAGATTTCTTGATGAAA641ATCTTGACTGAGCGTGGTTATTCCTTCACCACCTCAGCCGAGCGGGAAATTGTA

GLNAZ26TF JCVI-SOY3 Glycine max cDNA 5', mRNA sequence.
EV280949.1:680-703

GGTCGTGACCTCACAGATTTCTTGATGAAA680ATCTTGACTGAGCGTGGTTATTCCTTCACCACC

GLNBE73TF JCVI-SOY3 Glycine max cDNA 5', mRNA sequence.
EV282280.1:680-703

GGTCGTGACCTCACAGATTTCTTGATGAAA680ATCTTGACTGAGCGTGGTTATTCCTTCACCGCCTCAGCCGAGCGGGAAATTGT

Hops-Column-30R_2007-06-15/Hops-Column-30R_H02_001_1 Humulus lupulus (L. cultivar Phoenix) Trichome isolated from the female flower at mid-developmental stage Humulus lupulus cDNA, mRNA sequence.
EX515746.1:705-728

GGTCGTGACCTGACTGATGCCCTTATGAAA705ATCTTGACTGAGCGTGGTTATTCCTTCACCACCACAGCTGANCGTGAAATTGTA

Hops-CTAB-30_2007-06-07/Hops_CTAB-30R_H02_001_1 Humulus lupulus (L. cultivar Phoenix) Trichome isolated from the female flower at mid-developmental stage Humulus lupulus cDNA, mRNA sequence.
EX518604.1:702-725

NGTCGTGACCTGACTGATGCCCTTATGAAA702ATCTTGACTGAGCGTGGTTATTCCTTCACCACCACANCTGANCGTGAAATTGTA

EST m4f08 - [Humulus lupulus] Humulus lupulus Male-Hermaphrodite differential cDNA Humulus lupulus cDNA clone m4f08, mRNA sequence.
FG346768.1:133-156

GGTCGTGACCTGACTGATGCCCGTATGAAA133ATCTTGACTGAGCGTGGTTATTCCTTCACCACCACAGCTGAGCGTGAAATTGTA

GLPA335TF JCVI-SOY1 Glycine max cDNA 5', mRNA sequence.
FG998102.1:132-155

GGTCGTGACCTCACAGATTTCTTGATGAAA132ATCTTGACTGAGCGTGGTTATTCCTTCACCACCTCAGCCGAGCGGGAAATTGTA

GLNDJ10TF JCVI-SOY3 Glycine max cDNA 5', mRNA sequence.
FK020165.1:680-703

GGTCGTGACCTCACAGATTTCTTGATGAAA680ATCTTGACTGAGCGTGGTTATTCCTTCACCACCTCAGCCGAGCGGGAAATTGTA

CCOY6378.b1 CCOY Avena barbata root, pooled from different levels of rain and nitrogen (L) Avena barbata cDNA clone CCOY6378 5', mRNA sequence.
GR365005.1:600-623

GGTCGTGACTTGACTGACTACCTGATGAAG600ATCTTGACTGAGCGTGGTTATTCCTTCACAACCACCGCTGAACGCGAAATTGTC

TSA: Humulus lupulus var. lupulus mRNA, contig: comp278838_c1_seq8.
LA385571.1:957-980

GGTCGTGACCTGACTGATGCCCTTATGAAA957ATCTTGACTGAGCGTGGTTATTCCTTCACCACCACAGCTGAGCGTGAAATTGTA

TSA: Humulus lupulus var. lupulus mRNA, contig: comp278838_c1_seq12.
LA385575.1:957-980

GGTCGTGACCTGACTGATGCCCTTATGAAA957ATCTTGACTGAGCGTGGTTATTCCTTCACCACCACAGCTGAGCGTGAAATTGTA

TSA: Humulus lupulus var. lupulus mRNA, contig: comp278838_c1_seq13.
LA385576.1:613-636

GGTCGTGACCTGACTGATGCCCTTATGAAA613ATCTTGACTGAGCGTGGTTATTCCTTCACCACCACAGCTGAGCGTGAAATTGTA

TSA: Humulus lupulus var. lupulus mRNA, contig: comp278838_c1_seq15.
LA385578.1:613-636

GGTCGTGACCTGACTGATGCCCTTATGAAA613ATCTTGACTGAGCGTGGTTATTCCTTCACCACCACAGCTGAGCGTGAAATTGTA

Glycine max cDNA, clone: GMFL01-17-C16.
AK285830.1:679-702

GGTCGTGACCTCACAGATTTCTTGATGAAA679ATCTTGACTGAGCGTGGTTATTCCTTCACCACCTCAGCCGAGCGGGAAATTGTA

Soybean clone JCVI-FLGm-25L8 unknown mRNA.
BT096909.1:680-703

GGTCGTGACCTCACAGATTTCTTGATGAAA680ATCTTGACTGAGCGTGGTTATTCCTTCACCACCTCAGCCGAGCGGGAAATTGTA

Glycine max cultivar Williams 82 chromosome 18.
CP126443.1:59706180-59706203

GGTCGTGACCTCACAGATTTCTTGATGAAA59706180ATCTTGACTGAGCGTGGTTATTCCTTCACCACCTCAGCCGAGCGGGAAATTGTA

Eperua grandiflora clone Act-Eg3 actin-like protein (Act) gene, partial cds.
GU385994.1:328-351

GGACGTGACCTCACTGATGCCCTGATGAAA328ATCTTGACTGAGCGTGGTTATTCCTTCACCACCACGGCTGAGCGTGAAATTGTG

Humulus lupulus genome assembly, chromosome: 7.
OY720654.1:29872162-29872185

GGTCGTGACCTGACTGATGCCCTTATGAAA29872162ATCTTGACTGAGCGTGGTTATTCCTTCACCACCACAGCTGAGCGTGAAATTGTA

Data Export:

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Debug Info:

0.009 | 0.009 | search_start;
0.240 | 0.231 | search_plus_done; http://172.18.8.135:50400/match?q=GGAATAACCACGCTCAGTCAAGAT&k=0&no_gap=0&offset=0&limit=50
1.176 | 0.936 | search_minus_done; http://172.18.8.135:50400/match?q=ATCTTGACTGAGCGTGGTTATTCC&k=0&no_gap=0&offset=0&limit=48
1.199 | 0.022 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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