GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 08:01:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 74 unordered pieces.
FJ789637.1:12177-12196
AAAAAGAGATATTCTGATTTATAATAAAAA12177GGAATCCTACGGAAGAGCAAAAACATTATTTTCATGGCATAAAGAGAGAG
Brassica napus cultivar Xiang5A chromosome 12.
CP123887.1:54755043-54755062
GAAAGAGAATATTCTGATTTATAATAAAAA54755043GGAATCCTACGGAAGAGCAAAAACATTATTTTCATGGCATAAAGAGAGAG
Brassica napus genome assembly, chromosome: A07.
HG994361.1:28260878-28260897
AAAAGAGAATATTCTGATTTATAATAAAAA28260878GGAATCCTACGGAAGAGCAAAAACATTATTTTCATGGCATAAAGAGAGAG
Brassica napus genome assembly, chromosome: C06.
HG994370.1:48785445-48785464
GAAAGAGAATATTCTGATTTATAATAAAAA48785445GGAATCCTACGGAAGAGCAAAAACATTATTTTCATGGCATAAAGAGAGAG
Brassica napus microsatellite H5F213-2 sequence.
JX131138.1:1-20
1GGAATCCTACGGAAGAGCAAAAACATTATTTTCATGGCATAAAGAGAGAG
Brassica napus microsatellite H5F214-3 sequence.
JX131140.1:1-20
1GGAATCCTACGGAAGAGCAAAAACATTATTTTCATGGCATAAAGAGAGAG
Brassica napus microsatellite H5F214-4 sequence.
JX131141.1:1-20
1GGAATCCTACGGAAGAGCAAAAACATTATTTTCATGGCATAAAGAGAGAG
Brassica napus microsatellite H5F214-5 sequence.
JX131142.1:1-20
1GGAATCCTACGGAAGAGCAAAAACATTATTTTCATGGCATAAAGAGCGAG
Brassica napus microsatellite H5F215-3 sequence.
JX131143.1:1-20
1GGAATCCTACGGAAGAGCAAAAACATTATTTTCATGGCATAAAGAGAGAG
Brassica napus microsatellite H5F215-6 sequence.
JX131144.1:1-20
1GGAATCCTACGGAAGAGCAAAAACATTATTTTCATGGCATAAAGAGAGAG
Brassica napus microsatellite H5F215-9 sequence.
JX131145.1:1-20
1GGAATCCTACGGAAGAGCAAAAACATTATTTTCATGGCATAAAGAGAGAG
Brassica napus microsatellite H5F217-1 sequence.
JX131146.1:1-20
1GGAATCCTACGGAAGAGCAAAAACATTATTTTCATGGCATAAAGAGAGAG
Brassica napus microsatellite H6F218-8 sequence.
JX131149.1:1-20
1GGAATCCTACGGAAGAGCAAAAACATTATTCTCATGGCATAAAGAGAGAG
Brassica oleracea HDEM genome, scaffold: C6.
LR031880.1:45045863-45045882
AAAAGAGAATATTCTGATTTATAATAAAAA45045863GGAATCCTACGGAAGAGCAAAAACATTATTTTCATGGCATAAAGAGAGAG
Thlaspi arvense genome assembly, chromosome: 5.
OU466861.1:53891539-53891558
TGGAAAATATATTTCTTATATATAATAAAT53891539GGAATCCTACGGAAGAGCAAAACATTATTTTCATGGCATAAGAGAGAGAG
oei55c03.g1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BZ013373.1:206-225
CTCTCTCTTTATGCCATGAAAATAATGTTT206TTGCTCTTCCGTAGGATTCCATTTTATTATAAATCAGAATATTCTCTTTT
BOT01-102N9TR BOT01 Brassica oleracea genomic clone BOT01-102N9, genomic survey sequence.
FI752797.1:456-475
CTCTCTCTTTATGCCATGAAAATAATGTTT456TTGCTCTTCCGTAGGATTCCATTTTATTATAAATCAGAATATTCTCTTTT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB021P15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189262.2:8689-8708
CTCTCTCTTTATGCCATGAAAATAATGTTT8689TTGCTCTTCCGTAGGATTCCTTTTTATTATAAATCAGAATATTCTCTTTT
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 878 unordered pieces.
FJ789640.1:2958506-2958525
CTCTCTTTATGCCATAGAAAATAATTGTTT2958506TTGCTCTTCCGTAGGATTCCTTTTTATTATAAATCAGAATATTCTCTTTT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB047M06, complete sequence.
AC189370.2:80035-80054
CTCTCTCTTTATGCCATGAAAATAATGTTT80035TTGCTCTTCCGTAGGATTCCTTTTTATTATAAATCAGAATATTCTCTTTT
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:1129833-1129852
CTCTCTCTTTATGCCATGAAAATAATGTTT1129833TTGCTCTTCCGTAGGATTCCTTTTTATTATAAATCAGAATATTCTCTTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGAATCCTACGGAAGAGCAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGAATCCTACGGAAGAGCAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.151 | 0.142 | search_plus_done; http://172.18.8.135:50400/match?q=GGAATCCTACGGAAGAGCAA&k=0&no_gap=0&offset=0&limit=50
0.233 | 0.082 | search_minus_done; http://172.18.8.135:50400/match?q=TTGCTCTTCCGTAGGATTCC&k=0&no_gap=0&offset=0&limit=35
0.237 | 0.004 | cgi_end;

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