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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-11 23:19:24, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Felis catus Senzu DNA, chromosome: B2, American Shorthair breed.
AP023156.1:9702061-9702080
CATTTGCTCTCTTCAAACCTTGAACTGATT9702061GGACAAAGCCCACCTACATGGCAGAAGGCCATCTGCTTTTAGTCAACGTC
Brassica napus var. napus clone Bna.CAL_chrC03_45928585_25629-3, genomic survey sequence.
KM387896.1:768-787
CAATTCTAGGAGACAACCTTAATACTAAAC768GGACAAAGCCCACCTACATGTGTGCACATATGCTCATGATTATACCAATC
Brassica napus var. napus clone Bna.CAL_chrC03_45928585_Campino, genomic survey sequence.
KM387897.1:765-784
CAATTCTAGGAGACAACCTTAATACTAAAC765GGACAAAGCCCACCTACATGTGTGCACATATGCTCATGATTATACCAATC
Brassica napus subsp. rapifera clone Bna.CAL_chrC03_45928585_MagresPajberg, genomic survey sequence.
KM387898.1:767-786
CAATTCTAGGAGACAACCTTAATACTAAAC767GGACAAAGCCCACCTACATGTGTGCACATATGCTCATGATTATACCAATC
Brassica napus var. napus clone Bna.CAL_chrC03_45928585_Silona, genomic survey sequence.
KM387899.1:768-787
CAATTCTAGGAGACAACCTTAATACTAAAC768GGACAAAGCCCACCTACATGTGTGCACATATGCTCATGATTATACCAATC
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:19057489-19057508
CAATTCTAGGAGACAACCTTAATACTAAAC19057489GGACAAAGCCCACCTACATGTGTGCACATATGCTCATGATTATACCAATC
Brassica rapa genome, scaffold: A08.
LR031575.1:20782783-20782802
CAATTCTAGGAGACAACCTTAATACTAAAC20782783GGACAAAGCCCACCTACATGTGTGCACATATGCTCATGATTATACCAATC
Raphanus sativus genome assembly, chromosome: 9.
LR778318.1:24096260-24096279
CAAATCTAGGAGACAACCTTAATACTAAAC24096260GGACAAAGCCCACCTACATGTGTGCACATATGCTCATGATTATACCAATC
Brassica rapa genome assembly, chromosome: A08.
LS974624.2:26521295-26521314
CAATTCTAGGAGACAACCTTAATACTAAAC26521295GGACAAAGCCCACCTACATGTGTGCACATATGCTCATGATTATACCAATC
Sequence 22 from patent US 5811536.
AR042852.1:3712-3731
GATTGGTATAATCATGAGCATATGTGCACA3712CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCTCCTAGAATTG
Sequence 22 from patent US 6127123.
AR111360.1:3712-3731
GATTGGTATAATCATGAGCATATGTGCACA3712CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCTCCTAGAATTG
Brassica oleracea var. acephala isolate HRI/CGN 6210 cauliflower gene, partial cds.
AF241113.1:1076-1095
GATTGGTATAATCATGAGCATATGTGCACA1076CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCTCCTAGAATTG
Brassica oleracea var. acephala isolate HRI/CGN 4036 cauliflower gene, partial cds.
AF241114.1:1075-1094
GATTGGTATAATCATGAGCATATGTGCACA1075CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCTCCTAGAATTG
Brassica oleracea var. acephala isolate HRI/CGN 5688 cauliflower gene, partial sequence.
AF241115.1:1074-1093
GATTGGTATAATCATGAGCATATGTGCACA1074CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCCCCTAGAATTG
Brassica oleracea var. acephala isolate HRI/CGN 7227 cauliflower gene, partial sequence.
AF241116.1:1074-1093
GATTGGTATAATCATGAGCATATGTGCACA1074CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCTCCTAGAATTG
Brassica oleracea var. acephala isolate HRI/CGN 7545 cauliflower gene, partial cds.
AF241117.1:1076-1095
GATTGGTATAATCATGAGCATATGTGCACA1076CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCTCCTAGAATTG
Brassica oleracea var. acephala isolate HRI/CGN 7548 cauliflower gene, partial sequence.
AF241118.1:1074-1093
GATTGGTATAATCATGAGCATATGTGCACA1074CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCTCCTAGAATTG
Brassica oleracea var. acephala isolate HRI/CGN 7556 cauliflower gene, partial cds.
AF241119.1:1071-1090
GATTGGTATAATCATGAGCATATGTGCACA1071CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCTCCTAGAATTG
Brassica oleracea var. botrytis isolate HRI/CGN 11799 cauliflower gene, partial sequence.
AF241120.1:1076-1095
GATTGGTATAATCATGAGCATATGTGCACA1076CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCTCCTAGAATTG
Brassica oleracea var. botrytis isolate HRI/CGN 2481 cauliflower gene, partial sequence.
AF241121.1:1074-1093
GATTGGTATAATCATGAGCATATGTGCACA1074CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCTCCTAGAATTG
Brassica oleracea var. botrytis isolate HRI/CGN 4495 cauliflower gene, partial sequence.
AF241122.1:812-831
GATTGGTATAATCATGAGCATATGTGCACA812CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCTCCTAGAATTG
Brassica oleracea var. botrytis isolate HRI/CGN 4814 cauliflower gene, partial sequence.
AF241123.1:1074-1093
GATTGGTATAATCATGAGCATATGTGCACA1074CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCTCCTAGAATTG
Brassica oleracea var. botrytis isolate HRI/CGN 6249 cauliflower gene, partial sequence.
AF241124.1:1074-1093
GATTGGTATAATCATGAGCATATGTGCACA1074CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCTCCTAGAATTG
Brassica oleracea var. botrytis cauliflower gene, partial sequence.
AF241125.1:1074-1093
GATTGGTATAATCATGAGCATATGTGCACA1074CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCTCCTAGAATTG
Brassica oleracea var. botrytis isolate HRI/CGN 6792 cauliflower gene, partial sequence.
AF241126.1:1072-1091
GATTGGTATAATCATGAGCATATGTGCACA1072CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCTCCTAGAATTG
Brassica oleracea var. botrytis isolate HRI/CGN 7369 cauliflower gene, partial sequence.
AF241127.1:1074-1093
GATTGGTATAATCATGAGCATATGTGCACA1074CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCTCCTAGAATTG
Brassica oleracea var. botrytis isolate HRI/CGN 7452 cauliflower gene, partial sequence.
AF241128.1:1074-1093
GATTGGTATAATCATGAGCATATGTGCACA1074CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCTCCTAGAATTG
Brassica oleracea var. botrytis isolate HRI/CGN 8567 cauliflower gene, partial sequence.
AF241129.1:1074-1093
GATTGGTATAATCATGAGCATATGTGCACA1074CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCTCCTAGAATTG
Brassica oleracea var. italica isolate HRI/CGN 10674 cauliflower gene, partial sequence.
AF241130.1:1074-1093
GATTGGTATAATCATGAGCATATGTGCACA1074CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCTCCTAGAATTG
Brassica oleracea var. italica isolate HRI/CGN 3553 cauliflower gene, partial sequence.
AF241131.1:1074-1093
GATTGGTATAATCATGAGCATATGTGCACA1074CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCTCCTAGAATTG
Brassica oleracea var. italica isolate HRI/CGN 3569 cauliflower gene, partial sequence.
AF241132.1:1074-1093
GATTGGTATAATCATGAGCATATGTGCACA1074CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCTCCTAGAATTG
Brassica oleracea var. italica isolate HRI/CGN 3575 cauliflower gene, partial sequence.
AF241133.1:1074-1093
GATTGGTATAATCATGAGCATATGTGCACA1074CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCTCCTAGAATTG
Brassica oleracea var. italica isolate HRI/CGN 4707 cauliflower gene, partial sequence.
AF241134.1:1074-1093
GATTGGTATAATCATGAGCATATGTGCACA1074CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCTCCTAGAATTG
Brassica oleracea var. italica isolate HRI/CGN 4707 cauliflower gene, partial sequence.
AF241135.1:871-890
GATTGGTATAATCATGAGCATATGTGCACA871CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCTCCTAGAATTG
Brassica oleracea var. italica isolate HRI/CGN 7519 cauliflower gene, partial cds.
AF241136.1:1089-1108
GATTGGTATAATCATGAGCATATGTGCACA1089CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGATGTCTCCTAGAATTG
Brassica oleracea var. italica isolate HRI/CGN 8196 cauliflower gene, partial sequence.
AF241137.1:1074-1093
GATTGGTATAATCATGAGCATATGTGCACA1074CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCTCCTAGAATTG
Brassica oleracea var. italica isolate HRI/CGN 8680 cauliflower gene, partial sequence.
AF241138.1:1074-1093
GATTGGTATAATCATGAGCATATGTGCACA1074CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCTCCTAGAATTG
Brassica oleracea var. oleracea isolate HRI/CGN 7149 cauliflower gene, partial sequence.
AF241139.1:1073-1092
GATTGGTATAATCATGAGCATATGTGCACA1073CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCTCCTAGAATTG
Brassica oleracea var. oleracea isolate HRI/CGN 11125 cauliflower gene, partial cds.
AF241140.1:1076-1095
GATTGGTATAATCATGAGCATATGTGCACA1076CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCTCCTAGAATTG
Brassica oleracea var. oleracea isolate HRI/CGN 14079 cauliflower gene, partial cds.
AF241141.1:1076-1095
GATTGGTATAATCATGAGCATATGTGCACA1076CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCTCCTAGAATTG
Brassica oleracea var. oleracea isolate HRI/CGN 7230 cauliflower gene, partial cds.
AF241142.1:1076-1095
GATTGGTATAATCATGAGCATATGTGCACA1076CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCTCCTAGAATTG
Brassica oleracea var. oleracea isolate HRI/CGN 7343 cauliflower gene, partial cds.
AF241143.1:1081-1100
GATTGGTATAATCATGAGCATATGTGCACA1081CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCTCCTAGAATTG
Brassica oleracea var. oleracea isolate HRI/CGN 7795 cauliflower gene, partial cds.
AF241144.1:1081-1100
GATTGGTATAATCATGAGCATATGTGCACA1081CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCTCCTAGAATTG
Brassica oleracea var. oleracea isolate HRI/CGN 7796 cauliflower gene, partial cds.
AF241145.1:1076-1095
GATTGGTATAATCATGAGCATATGTGCACA1076CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCTCCTAGAATTG
Brassica oleracea var. oleracea isolate HRI/CGN 7797 cauliflower gene, partial cds.
AF241146.1:1076-1095
GATTGGTATAATCATGAGCATATGTGCACA1076CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCTCCTAGAATTG
Brassica oleracea var. oleracea isolate HRI/CGN 8694 cauliflower gene, partial sequence.
AF241147.1:1074-1093
GATTGGTATAATCATGAGCATATGTGCACA1074CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCTCCTAGAATTG
Brassica oleracea var. oleracea isolate HRI/CGN 8705 cauliflower gene, partial cds.
AF241148.1:1075-1094
GATTGGTATAATCATGAGCATATGTGCACA1075CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCTCCTAGAATTG
Brassica oleracea var. oleracea isolate HRI/CGN 8707 cauliflower gene, partial cds.
AF241149.1:1076-1095
GATTGGTATAATCATGAGCATATGTGCACA1076CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCTCCTAGAATTG
Brassica incana cauliflower gene, partial cds.
AF241150.1:1076-1095
GATTGGTATAATCATGAGCATATGTGCACA1076CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCTCCTAGAATTG
Brassica napus genome assembly, chromosome: C03.
HG994367.1:55618583-55618602
GATTGGTATAATCATGAGCATATGTGCACA55618583CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCTCCTAGAATTG
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:56152285-56152304
GATTGGTATAATCATGAGCATATGTGCACA56152285CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCTCCTAGAATTG
Raphanus sativus genome assembly, chromosome: 8.
OY743205.1:4798022-4798041
GATTGGTATAATCATGAGCATATGTGCACA4798022CATGTAGGTGGGCTTTGTCCGTTTAGTATTAAGGTTGTCTCCTAGATTTG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GGACAAAGCCCACCTACATG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GGACAAAGCCCACCTACATG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.362 | 0.353 | search_plus_done; http://172.18.8.135:50400/match?q=GGACAAAGCCCACCTACATG&k=0&no_gap=0&offset=0&limit=50
0.483 | 0.122 | search_minus_done; http://172.18.8.135:50400/match?q=CATGTAGGTGGGCTTTGTCC&k=0&no_gap=0&offset=0&limit=41
0.513 | 0.029 | cgi_end;

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