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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 13:10:26, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Epinephelus fuscoguttatus DNA, LG7, complete sequence.
AP022681.1:36389364-36389383
ATCGTCGTAACACTGTTCTGCTGCAGGCTC36389364GGACAATCAACCTCCAGCATTCAGCAGCCTGCCAAAGCCCAGAGGCCGAG
TSA: Sedum alfredii, clone Sa_Contig03617.
HE720722.1:623-642
GCCTTCAGTACCACTTCTGGTGTCACACAT623GGACAATCAACCTCCAGCATGTTCTCCTCCAAGACAAAGTGCTGACGCCA
TSA: Musa acuminata AAA Group Unigene98385_NK1 mRNA sequence.
JV431854.1:883-902
GCCTTGAGAACAATTTCAGGAGTGACACAG883GGACAATCAACCTCCAGCATGTTCTCCTCTAGGACAAAATGCTGACGCCA
Musa acuminata subsp. malaccensis isolate AA chromosome 1.
CP126370.1:30494767-30494786
GCCTTGAGAACAATTTCAGGAGTGACACAG30494767GGACAATCAACCTCCAGCATGTTCTCCTCTAGGACAAAATGCTGTAACAA
Sequence 3882 from patent US 9890389.
MI432534.1:409-428
TGGCGTCAGCATTTTGTCCTAGAGGAGAAC409ATGCTGGAGGTTGATTGTCCCTGTGTCACTCCTGAAATTGTTCTCAAGGC
Sequence 3882 from patent US 10597672.
MO987456.1:409-428
TGGCGTCAGCATTTTGTCCTAGAGGAGAAC409ATGCTGGAGGTTGATTGTCCCTGTGTCACTCCTGAAATTGTTCTCAAGGC
Sequence 3882 from patent US 11352636.
OO264173.1:409-428
TGGCGTCAGCATTTTGTCCTAGAGGAGAAC409ATGCTGGAGGTTGATTGTCCCTGTGTCACTCCTGAAATTGTTCTCAAGGC
TSA: Musa acuminata AAA Group Unigene85869_B1 mRNA sequence.
JV354435.1:65-84
TGGCGTCAGCATTTTGTCCTAGAGGAGAAC65ATGCTGGAGGTTGATTGTCCCTGTGTCACTCCTGAAATTGTTCTCAAGGC
Musa troglodytarum cultivar karat chromosome 1.
CP097502.1:41230919-41230938
TTGTTACAGCATTTTGTCCTAGAGGAGAAC41230919ATGCTGGAGGTTGATTGTCCCTGTGTCACTCCTGAAATTGTTCTTAAGGC
Musa troglodytarum cultivar karat chromosome 1.
CP097502.1:41714621-41714640
TTGTTACAGCATTTTGTCCTAGAGGAGAAC41714621ATGCTGGAGGTTGATTGTCCCTGTGTCACTCCTGAAATTGTTCTTAAGGC
Musa acuminata subsp. malaccensis isolate AA chromosome 12.
CP126381.1:30161990-30162009
TTGTTACAGCATTTTGTCCTAGAGGAGAAC30161990ATGCTGGAGGTTGATTGTCCCTGTGTCACTCCTGAAATTGTTCTCAAGGC
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A01.
HG996466.1:22236686-22236705
TTGTTACAGCATTTTGTCCTAGAGGAGAAC22236686ATGCTGGAGGTTGATTGTCCCTGTGTCACTCCTGAAATTGTTCTCAAGGC
Musa schizocarpa genome assembly, chromosome: S01.
LS990915.1:24234006-24234025
TTGTTACAGCATTTTGTCCTAGAGGAGAAC24234006ATGCTGGAGGTTGATTGTCCCTGTGTCACTCCTGAAATTGTTCTCAAGGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGACAATCAACCTCCAGCAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGACAATCAACCTCCAGCAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.117 | 0.108 | search_plus_done; http://172.18.8.135:50400/match?q=GGACAATCAACCTCCAGCAT&k=0&no_gap=0&offset=0&limit=50
0.321 | 0.204 | search_minus_done; http://172.18.8.135:50400/match?q=ATGCTGGAGGTTGATTGTCC&k=0&no_gap=0&offset=0&limit=46
0.327 | 0.006 | cgi_end;

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