GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 23:47:14, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB037I10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC241016.1:107650-107669
TTTATATACAGTATAAATCTATGTAAGTTA107650GGACACAAGATAGAGGTCCTTTTCAAGATCAGCTACTTCAAGATCAGCTA
Brassica rapa subsp. pekinensis clone KBrH088C05, complete sequence.
CU914556.1:14046-14065
TTTATATACAGTATAAATCTATGTAAGTTA14046GGACACAAGATAGAGGTCCTTTTCAAGATCAGCTACTTCAAGATCAGCTA
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:76107736-76107755
TTAAAAAAAAGCATAAATCTATGTAAGTTA76107736GGACACAAGATAGAGGTCCTTCCCATGGTGTGACAGCTTGGATGAATGTG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB029G12, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces.
AC241006.1:67565-67584
TAGCTGATCTTGAAGTAGCTGATCTTGAAA67565AGGACCTCTATCTTGTGTCCTAACTTACATAGATTTATACTGTATATAAA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB033I20, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC241012.1:107118-107137
TAGCTGATCTTGAAGTAGCTGATCTTGAAA107118AGGACCTCTATCTTGTGTCCTAACTTACATAGATTTATACTGTATATAAA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB035A14, complete sequence.
AC189315.2:3133-3152
TAGCTGATCTTGAAGTAGCTGATCTTGAAA3133AGGACCTCTATCTTGTGTCCTAACTTACATAGATTTATACTGTATATAAA
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:2251620-2251639
TAGCTGATCTTGAAGTAGCTGATCTTGAAA2251620AGGACCTCTATCTTGTGTCCTAACTTACATAGATTTATACTGTATATAAA
Brassica napus genome assembly, chromosome: C03.
HG994367.1:3099651-3099670
CACATTCATCCAAGCTGTCACACCATGGGA3099651AGGACCTCTATCTTGTGTCCTAACTTACATAGATTTATGCTTTTTTTTAA
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:3056559-3056578
CACATTCATCCAAGCTGTCACACCATGGGA3056559AGGACCTCTATCTTGTGTCCTAACTTACATAGATTTATGCTTTTTTTTAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGACACAAGATAGAGGTCCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGACACAAGATAGAGGTCCT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.102 | 0.094 | search_plus_done; http://172.18.8.135:50400/match?q=GGACACAAGATAGAGGTCCT&k=0&no_gap=0&offset=0&limit=50
0.127 | 0.025 | search_minus_done; http://172.18.8.135:50400/match?q=AGGACCTCTATCTTGTGTCC&k=0&no_gap=0&offset=0&limit=47
0.130 | 0.004 | cgi_end;

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