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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-12 20:28:17, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Gallus gallus breed Huxu chromosome 1.
CP100555.1:145008147-145008165
GAGAATCTGTCCCAAGTCAGATTCCTGGGG145008147GGACACCACTCATCACTAGCTTTTACTTGAACATGGAGCTGCTGACCAC
Gallus gallus breed Huxu chromosome 2.
CP100556.1:74799110-74799128
AGAGCACTGGACCCCAGACACACCTGTGGA74799110GGACACCACTCATCACTAGCCTCCACTTGGACATAGAGAGTCATTCCCA
Gallus gallus breed Huxu chromosome 3.
CP100557.1:4580478-4580496
AGAACACTGGTCACAAGATGGACCCCTGGG4580478GGACACCACTCATCACTAGCTTCTATCTGGGTGTCTCTCTGTTGACCTC
Betta splendens genome assembly, chromosome: 6.
LR132013.3:18536073-18536091
CAACTGTCTGAAGGTGCCAGTGTTTTCAGT18536073GGACACCACTCATCACTAGTGTGTTTTCAACATCCGACCAAAAGTGAGC
Caprimulgus europaeus genome assembly, chromosome: 1.
OU015523.1:84310774-84310792
ACAGCTCTGGTCCCAATATCTAGCCCGGAG84310774GGACACCACTCATCACTAGTCTCCCCCTTGGACATTGAGCCAAATTGTG
Caprimulgus europaeus genome assembly, chromosome: 1.
OU015523.1:89271411-89271429
ACAGCACCAGACCCAATACCAACCCCTGAG89271411GGACACCACTCATCACTAGTCTCCAGCAGGACATTGAGCTGCTGACAAC
Caprimulgus europaeus genome assembly, chromosome: 2.
OU015524.1:78955982-78956000
ACTGCACTGGTCTCAATACTGACCCCTGAG78955982GGACACCACTCATCACTAGTATTCACTTGGACATCAAGCCATTTATAAC
Caprimulgus europaeus genome assembly, chromosome: 4.
OU015526.1:70748088-70748106
ACAGTGCCAGTCCCAACACTGACCACTGAG70748088GGACACCACTCATCACTAGCCTCCACTTGGACATCAAGCCACTGACCAC
Meleagris gallopavo genome assembly, chromosome: Z.
OW982255.1:22199921-22199939
AGAGCACCAGTTTCAAGATGGAGTCGAAGG22199921GGACACCACTCATCACTAGCCTCCTCTTGGACATACAGCCATTGACAAT
Meleagris gallopavo genome assembly, chromosome: 12.
OW982263.1:2987886-2987904
AGAACATCAGTTCCAAGACAGATCCCCAAG2987886GGACACCACTCATCACTAGCTTCTACCTGGACACAGAGCCATAGGGTTC
Meleagris gallopavo genome assembly, chromosome: Z.
OW982294.1:22422627-22422645
AGAGCACCAGTTTCAAGATGGAGTCGAAGG22422627GGACACCACTCATCACTAGCCTCCTCTTGGACATACAGCCATTGACAAT
Meleagris gallopavo genome assembly, chromosome: 12.
OW982302.1:2904809-2904827
AGAACATCAGTTCCAAGACAGATCCCCAAG2904809GGACACCACTCATCACTAGCTTCTACCTGGACACAGAGCCATAGGGTTC
Phalacrocorax aristotelis genome assembly, chromosome: 6.
OX451228.1:27825202-27825220
ACAGCACTGGTCCCAGTATGGACCCTTGAG27825202GGACACCACTCATCACTAGTGTCTACCTGAACATCAAGCCATTGACCAC
Cinclus cinclus genome assembly, chromosome: Z.
OY759680.1:14581862-14581880
AGAGCAGGGGTCCCAAGACAGAACCCTGAG14581862GGACACCACTCATCACTAGTCTCTACCTGGACACAGAGCCATTGACCTC
Phalacrocorax carbo genome assembly, chromosome: 6.
OY997607.1:28412544-28412562
ACAGTACTGGTCCCAGTATGGACCCTTGAG28412544GGACACCACTCATCACTAGTCTCTACCTGAACATCGAGCCATTGACCAC
Phalacrocorax carbo genome assembly, chromosome: 7.
OY997608.1:35923832-35923850
ACAGCACTGGTCCCAGTACAGACCCTTGAG35923832GGACACCACTCATCACTAGTCTCCATCTGGACATTGAGCCATTGACTAC
Anas acuta genome assembly, chromosome: 8.
OZ009970.1:14206077-14206095
ACAGGACCAATCCCAAGATAGATCCCTGAG14206077GGACACCACTCATCACTAGCCTCCACCTGGACATAGAGCCATTTAATGC
CH261-10P5_Sp6.1 CH261 Gallus gallus genomic clone CH261-10P5, genomic survey sequence.
CC241594.1:489-507
GAGAATCTGTCCCAAGTCAGATTCCTGGGG489GGACACCACTCATCACTAGCTTTTACTTGAACATGGAGCTGCTGACCAC
Gallus gallus BAC clone CH261-60P24 from chromosome w, complete sequence.
AC239805.3:8982-9000
GTGGTCAATGGCTTCATATCCAGAGGAAGG8982CTAGTGATGAGTGGTGTCCCCCAGGGGTCTGTCTTGGGACTGGTACTCT
Gallus gallus fosmid J_AD-708A9, complete sequence.
AC270336.1:22662-22680
GTGGTCAATGGCTTCATATCCAGAGGAAGG22662CTAGTGATGAGTGGTGTCCCCCAGGGGTCTGTCTTGGGACTGGTACTCT
Gallus gallus breed Huxu chromosome W.
CP100593.1:4020255-4020273
GTGGTCAATGGCTTCATATCCAGAGGAAGG4020255CTAGTGATGAGTGGTGTCCCCCAGGGGTCTGTCTTGGGACTGGTACTCT
Anas platyrhynchos genome assembly, chromosome: 8.
LS423618.1:17171433-17171451
GCATTAAATGGCTCTGTGTCCAGGTGGAGG17171433CTAGTGATGAGTGGTGTCCCTCAGGGATCTATCTTGGGATTGGTCCTGT
Caprimulgus europaeus genome assembly, chromosome: Z.
OU015527.1:20555001-20555019
GTGGTCAACAGCTCAATGTCCAGGTGGAAA20555001CTAGTGATGAGTGGTGTCCCTCAAGGTTCAGTATTGGGACCGGTGCTCT
Caprimulgus europaeus genome assembly, chromosome: 5.
OU015528.1:20559394-20559412
ATGGTCAGCAGTTTGATGTCCAGATGGAGA20559394CTAGTGATGAGTGGTGTCCCTCAGTGTTTCATGTTGGGACCAGTACTAC
Caprimulgus europaeus genome assembly, chromosome: W.
OU015537.1:9225458-9225476
GCAGTCAACGACTCGATGTCCAGATGGATA9225458CTAGTGATGAGTGGTGTCCCTCAGAGGTCCATATTGGGACCTGTATTAT
Caprimulgus europaeus genome assembly, chromosome: W.
OU015537.1:12280675-12280693
CTGAGGAACAGCTCAAAGTCTGAGTGGAAT12280675CTAGTGATGAGTGGTGTCCCTCAAGGACAGCATTGGGACCGGTGCTCTT
Acrocephalus scirpaceus scirpaceus genome assembly, chromosome: 2.
OU383774.1:102990620-102990638
AGGATGAGCTTCAGTGTATGTGTGGTAGAG102990620CTAGTGATGAGTGGTGTCCCTTAGGGGTCTCACTGGGGCTGATACTGCT
Phalacrocorax aristotelis genome assembly, chromosome: 1.
OX451222.1:99856728-99856746
ACAGTCAATGGCTCAGTGTCCAGGTGGAAA99856728CTAGTGATGAGTGGTGTCCCTCAGGGGTCTGTACAGGATCTAATACTAT
Phalacrocorax aristotelis genome assembly, chromosome: 2.
OX451223.1:165162394-165162412
GTGGTCAATCGCTCAACATCCAGATGGAGA165162394CTAGTGATGAGTGGTGTCCCTCAGGGGTCCATACTGGGACCGGTACTGT
Tetrao urogallus genome assembly, chromosome: 1.
OX596294.1:136426985-136427003
GAAGTCACTGGTTCTATATCTAGATGGAGG136426985CTAGTGATGAGTGGTGTCCCCTAGGAGTCCATCTTGGTATCAGTGCTCT
Somateria mollissima genome assembly, chromosome: 8.
OX598310.1:18258400-18258418
GCATTAAATGGCTCTATGTCCAGGTGGAGG18258400CTAGTGATGAGTGGTGTCCCTCAGGGATCTATCTTGGGACTGGTCCTGT
Somateria mollissima genome assembly, chromosome: 4.
OX598693.1:38104091-38104109
GCACTCAGTGGCTCGATGTCCAGGTGGAGA38104091CTAGTGATGAGTGGTGTCCCTCAGGGTAACGGTGTTGGGACCGTCACTG
Somateria mollissima genome assembly, chromosome: 8.
OX598697.1:18096985-18097003
GCATTAAATGGCTCTATGTCCAGGTGGAGG18096985CTAGTGATGAGTGGTGTCCCTCAGGGATCTATCTTGGGACTGGTCCTGT
Nesoenas mayeri genome assembly, chromosome: 1.
OY720056.1:95813425-95813443
TTTTATAGTTAGAATTTGAATCACTTGAAT95813425CTAGTGATGAGTGGTGTCCCTCAGGGAATATCTATTTGAACTGGTGTTA
Chroicocephalus ridibundus genome assembly, chromosome: Z.
OZ001737.1:76663080-76663098
GTGGTCAACTATTTGATGCTCAGGTGGAGA76663080CTAGTGATGAGTGGTGTCCCTCAGGGGTCCGTATTGGGACCAGAAGTTT
Gallus gallus chromosome W clone CH261-168D14, WORKING DRAFT SEQUENCE, 17 unordered pieces.
AC245303.1:39177-39195
GTGGTCAATGGCTTCATATCCAGAGGAAGG39177CTAGTGATGAGTGGTGTCCCCCAGGGGTCTGTCTTGGGACTGGTACTCT
Brassica oleracea var. italica Pp523 downy mildew resistance gene-linked marker OPJ19_550 genomic sequence.
DQ459310.1:531-549
TTTTAAAGAATATGTATGAAGAAAAAAAAA531CTAGTGATGAGTGGTGTCC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GGACACCACTCATCACTAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GGACACCACTCATCACTAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.255 | 0.246 | search_plus_done; http://172.18.8.135:50400/match?q=GGACACCACTCATCACTAG&k=0&no_gap=0&offset=0&limit=50
0.419 | 0.165 | search_minus_done; http://172.18.8.135:50400/match?q=CTAGTGATGAGTGGTGTCC&k=0&no_gap=0&offset=0&limit=32
0.432 | 0.013 | cgi_end;

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