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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 18:22:53, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Raphanus sativus var. sativus RNA, contig: WG3_2988.
FX659519.1:951-970
GGATCTCGATCTCGCGGCAGATCTGGCGGC951GGACGTTCTCCTCGTGGTTACCGTAGATCACCTTGAGCGCGTAGACGCGT
TSA: Raphanus sativus RS27238 mRNA sequence.
JT811785.1:894-913
GGATCTCGATCTCGCGGCAGATCTGGCGGC894GGACGTTCTCCTCGTGGTTACCGTAGATCACCTTGAGCGCGTAGACGCGT
Raphanus sativus genome assembly, chromosome: 8.
OY743205.1:26895062-26895081
GGATCTCGATCTCGCGGCAGATCTGGCGCC26895062GGACGTTCTCCTCGTGGTTACCGTAGATCACCTTGAGCGCGTAGACGCGG
RS3AB74TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EW732635.1:429-448
CCGCGTCTACGCGCTCAAGGTGATCTACGG429TAACCACGAGGAGAACGTCCGCCGCCAGATCTGCCGCGAGATTGAGATCC
RS3AQ02TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EW733299.1:429-448
CCGCGTCTACGCGCTCAAGGTGATCTACGG429TAACCACGAGGAGAACGTCCGCCGCCAGATCTGCCGCGAGATTGAGATCC
RS1GN24TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
FD940247.1:108-127
CCGCGTCTACGCGCTCAAGGTGATCTACGG108TAACCACGAGGAGAACGTCCGGCGCCAGATCTGCCGCGAGATCGAGATCC
Raphanus sativus mRNA, clone: RSCF05K10, 5' end sequence.
FY429237.1:443-462
CCGCGTCTACGCGCTCAAGGTGATCTACGG443TAACCACGAGGAGAACGTCCGGCGCCAGATCTGCCGCGAGATCGAGATCC
Raphanus sativus mRNA, clone: RSCS07B09, 5' end sequence.
FY448293.1:442-461
CCGCGTCTACGCGCTCAAGGTGATCTACGG442TAACCACGAGGAGAACGTCCGGCGCCAGATCTGCCGCGAGATCGAGATCC
Raphanus sativus genome assembly, chromosome: 9.
LR778318.1:1999220-1999239
CCGCGTCTACGCGCTCAAGGTGATCTACGG1999220TAACCACGAGGAGAACGTCCGGCGCCAGATCTGCCGCGAGATCGAGATCC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GGACGTTCTCCTCGTGGTTA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GGACGTTCTCCTCGTGGTTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.311 | 0.302 | search_plus_done; http://172.18.8.135:50400/match?q=GGACGTTCTCCTCGTGGTTA&k=0&no_gap=0&offset=0&limit=50
0.922 | 0.612 | search_minus_done; http://172.18.8.135:50400/match?q=TAACCACGAGGAGAACGTCC&k=0&no_gap=0&offset=0&limit=47
0.926 | 0.004 | cgi_end;

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