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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 00:44:51, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 212 from patent US 10113176.
MM129400.1:684-703
CGGCCGCCCGCTCGGGGGCGTCGCGGCGCA684GGACTTCAGGTACGACTCCGTCAGCTACGCTCAGAACTTCGACAACGGCG
Sequence 466 from patent US 10113176.
MM129654.1:519-538
CGGCCGCCCGCTCGGAGGCGTCGCCGCGCA519GGACTTCAGGTACGACTCCGTCAGCTACGCCCAGAACTTCGACAACGGCG
Sequence 3237 from patent US 10113176.
MM132132.1:449-468
CGGCCTCCCGCTCGGAGGCGTCGCCGCGCA449GGACTTCAGGTACGACTCCGTCAGCTACGCCCAGAACTTCGACAACGGCG
Sequence 3238 from patent US 10113176.
MM132133.1:760-779
CGGCCTCCCGCTCGGAGGCGTCGCCGCGCA760GGACTTCAGGTACGACTCCGTCAGCTACGCCCAGAACTTCGACAACGGCG
Sequence 3239 from patent US 10113176.
MM132134.1:739-758
CGGCCTCCCGCTCGGAGGCGTCGCCGCGCA739GGACTTCAGGTACGACTCCGTCAGCTACGCCCAGAACTTCGACAACGGCG
Sequence 212 from patent US 11078492.
MY223054.1:684-703
CGGCCGCCCGCTCGGGGGCGTCGCGGCGCA684GGACTTCAGGTACGACTCCGTCAGCTACGCTCAGAACTTCGACAACGGCG
Sequence 466 from patent US 11078492.
MY223308.1:519-538
CGGCCGCCCGCTCGGAGGCGTCGCCGCGCA519GGACTTCAGGTACGACTCCGTCAGCTACGCCCAGAACTTCGACAACGGCG
Sequence 3237 from patent US 11078492.
MY225786.1:449-468
CGGCCTCCCGCTCGGAGGCGTCGCCGCGCA449GGACTTCAGGTACGACTCCGTCAGCTACGCCCAGAACTTCGACAACGGCG
Sequence 3238 from patent US 11078492.
MY225787.1:760-779
CGGCCTCCCGCTCGGAGGCGTCGCCGCGCA760GGACTTCAGGTACGACTCCGTCAGCTACGCCCAGAACTTCGACAACGGCG
Sequence 3239 from patent US 11078492.
MY225788.1:739-758
CGGCCTCCCGCTCGGAGGCGTCGCCGCGCA739GGACTTCAGGTACGACTCCGTCAGCTACGCCCAGAACTTCGACAACGGCG
WHE4206_D06_G12ZS Aegilops speltoides pre-meiotic anther cDNA library Aegilops speltoides cDNA clone WHE4206_D06_G12, mRNA sequence.
BQ841041.1:565-584
GGCCGCCCTGCTCGGAGGCGTCGCCGCGCA565GGACTTCAGGTACGACTCCGTCAGCTACGCTCAGAACTTCGACAACGGCG
HM13E17r HM Hordeum vulgare subsp. vulgare cDNA clone HM13E17 5-PRIME, mRNA sequence.
BU996338.1:217-236
CGGCCTCCCGCTCGGAGGCGTCGCCGCGCA217GGACTTCAGGTACGACTCCGTCAGCTACGCCCAGAACTTCGACAACGGCG
AZO2.121J19F010209 AZO2 Triticum aestivum cDNA clone AZO2121J19, mRNA sequence.
CD872809.1:583-602
CGGCCGCCCGCTCGGGGGCGTCGCGGCGCA583GGACTTCAGGTACGACTCCGTCAGCTACGCTCAGAACTTCGACAACGGCG
FGAS018618 Triticum aestivum FGAS: Library 5 GATE 7 Triticum aestivum cDNA, mRNA sequence.
CK207005.1:582-601
CGGCCGCCCGCTCGGAGGCGTCGCCGCGCA582GGACTTCAGGTACGACTCCGTCAGCTACGCTCAGAACTTCGACAACGGCG
FGAS021455 Triticum aestivum FGAS: Library 5 GATE 7 Triticum aestivum cDNA, mRNA sequence.
CK209679.1:508-527
CGGCCGCCCGCTCGGGGGCGTCGCGGCGCA508GGACTTCAGGTACGACTCCGTCAGCTACGCTCAGAACTTCGACAACGGCG
BG02013A2G08.f1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone BG02013A2G08.f1, mRNA sequence.
FF349003.1:449-468
CGGCCTCCCGCTCGGAGGCGTCGCCGCGCA449GGACTTCAGGTACGACTCCGTCAGCTACGCCCAGAACTTCGACAACGGCG
HVSMEn0013F23f2 Hordeum vulgare rachis cDNA library HVSMEn (HVcDNA0015)2 Hordeum vulgare subsp. vulgare cDNA clone HV__Ea0045P24r, mRNA sequence.
GH227958.1:454-473
CGGCCTCCCGCTCGGAGGCGTCGCCGCGCA454GGACTTCAGGTACGACTCCGTC
Brachypodium distachyon mRNA, clone: PL016C01-A-006_P17, 3'end sequence.
HX830938.1:123-142
CGACGGCCGCCCCGTCGCGAGCTCCGCGCA123GGACTTCAGGTACGACTCCGACAGCTACGCCCAGAACTTCGACGATGGCG
Brachypodium distachyon mRNA, clone: PL016C01-A-019_M08, 3'end sequence.
HX835746.1:163-182
CGACGGCCGCCCCGTCGCGAGCTCCGCGCA163GGACTTCAGGTACGACTCCGACAGCTACGCCCAGAACTTCGACGATGGCG
Brachypodium distachyon mRNA, clone: PL016C01-A-026_F04, 3'end sequence.
HX838202.1:158-177
CGACGGCCGCCCCGTCGCGAGCTCCGCGCA158GGACTTCAGGTACGACTCCGACAGCTACGCCCAGAACTTCGACGATGGCG
Brachypodium distachyon mRNA, clone: PL016C01-A-064_D19, 3'end sequence.
HX852406.1:162-181
CGACGGCCGCCCCGTCGCGAGCTCCGCGCA162GGACTTCAGGTACGACTCCGACAGCTACGCCCAGAACTTCGACGATGGCG
Brachypodium distachyon mRNA, clone: PL016C01-A-081_O08, 3'end sequence.
HX858927.1:156-175
CGACGGCCGCCCCGTCGCGAGCTCCGCGCA156GGACTTCAGGTACGACTCCGACAGCTACGCCCAGAACTTCGACGATGGCG
JN177_LCP126_H01 cDNA library of wheat cultivar Jinan 177 Triticum aestivum cDNA, mRNA sequence.
JZ883019.1:451-470
CGGCCGCCCGCTCGGGGGCGTCGCGGCGCA451GGACTTCAGGTACGACTCCGTCAGCTACGCTCAGAACTTCGACAACGGCG
TSA: Triticum aestivum Ta_Contig31411.ansp mRNA sequence.
JW027429.1:686-705
CGGCCGCCCGCTCGGAGGCGTCGCCGCGCA686GGACTTCAGGTACGACTCCGTCAGCTACGCTCAGAACTTCGACAACGGCG
DH106I10.R Brachypodium distachyon Bd21 BamH1 BAC library DB Brachypodium distachyon genomic clone DB106I10.R 3', genomic survey sequence.
GS155950.2:302-321
CGACGGCCGCCCCGTCGCGAGCTCCGCGCA302GGACTTCAGGTACGACTCCGACAGCTACGCCCAGAACTTCGACGATGGCG
Brachypodium distachyon mRNA, clone: PL016C01-A-019_M08.
AK427273.1:595-614
CGACGGCCGCCCCGTCGCGAGCTCCGCGCA595GGACTTCAGGTACGACTCCGACAGCTACGCCCAGAACTTCGACGATGGCG
Brachypodium distachyon mRNA, clone: PL016C01-A-026_F04.
AK428290.1:630-649
CGACGGCCGCCCCGTCGCGAGCTCCGCGCA630GGACTTCAGGTACGACTCCGACAGCTACGCCCAGAACTTCGACGATGGCG
Brachypodium distachyon mRNA, clone: PL016C01-A-064_D19.
AK434156.1:595-614
CGACGGCCGCCCCGTCGCGAGCTCCGCGCA595GGACTTCAGGTACGACTCCGACAGCTACGCCCAGAACTTCGACGATGGCG
Brachypodium distachyon mRNA, clone: PL016C01-A-081_O08.
AK436813.1:630-649
CGACGGCCGCCCCGTCGCGAGCTCCGCGCA630GGACTTCAGGTACGACTCCGACAGCTACGCCCAGAACTTCGACGATGGCG
Triticum aestivum mRNA, clone: tplb0014l21, cultivar Chinese Spring.
AK457049.1:595-614
CGGCCGCCCGCTCGGGGGCGTCGCGGCGCA595GGACTTCAGGTACGACTCCGTCAGCTACGCTCAGAACTTCGACAACGGCG
Hordeum vulgare subsp. vulgare cultivar Morex clone BAC 0269G09, *** SEQUENCING IN PROGRESS ***, 52 unordered pieces.
AC251516.2:12753-12772
CGGCCTCCCGCTCGGAGGCGTCGCCGCGCA12753GGACTTCAGGTACGACTCCGTCAGCTACGCCCAGAACTTCGACAACGGCG
Hordeum vulgare subsp. vulgare cultivar Morex clone BAC 0303P19, *** SEQUENCING IN PROGRESS ***, 66 unordered pieces.
AC252087.2:53343-53362
CGGCCTCCCGCTCGGAGGCGTCGCCGCGCA53343GGACTTCAGGTACGACTCCGTCAGCTACGCCCAGAACTTCGACAACGGCG
Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1125L06.
AK360812.1:485-504
CGGCCTCCCGCTCGGAGGCGTCGCCGCGCA485GGACTTCAGGTACGACTCCGTCAGCTACGCCCAGAACTTCGACAACGGCG
Cenchrus purpureus cultivar elephant grass chromosome A4.
CP053457.1:92537706-92537725
CGGCCGCCCGCTCAAGGCCGCTGCGCTGCG92537706GGACTTCAGGTACGACTCCGTCACAGTGACAGGAGGAGGGTTCTCTTCTC
Cenchrus purpureus cultivar elephant grass chromosome B1.
CP053461.1:70146124-70146143
CGCGACGGCCGGCAAGGCCGCCGCGCCGCA70146124GGACTTCAGGTACGACTCCGTCACCTACGCGCAGAACTTCGACGACGGCG
Cenchrus purpureus cultivar elephant grass chromosome B4.
CP053464.1:62226519-62226538
CGGCCGCCCGCTCAAGGCCGCCGCGCTGTT62226519GGACTTCAGGTACGACTCCGTCACCTACCCGCAGAATTGAACTTCGATGA
Phyllostachys edulis cDNA clone: bphylf054o13, full insert sequence.
FP097424.1:569-588
CGGCCGCGACGGCCTCCCGCTCTCCTCGCA569GGACTTCAGGTACGACTCCGTCAGCTACGCCCATAACTTCGACAATGGCG
Phyllostachys edulis cDNA clone: bphylf046e24, full insert sequence.
FP099601.1:464-483
CGGCCGCGACGGCCTCCCGCTCTCCGCGCA464GGACTTCAGGTACGACTCCGTGAGCTACGCACAAAACTTCGACAATGGCG
Triticum aestivum genome assembly, chromosome: 7B.
LR862527.1:197418343-197418362
CGGCCGCCCGCTCGGAGGCGTCGCCGCGCA197418343GGACTTCAGGTACGACTCCGTCAGCTACGCTCAGAACTTCGACAACGGCG
Triticum aestivum genome assembly, chromosome: 7B.
LR862548.1:195534667-195534686
CGGCCGCCCGCTCGGAGGCGTCGCCGCGCA195534667GGACTTCAGGTACGACTCCGTCAGCTACGCTCAGAACTTCGACAACGGCG
Triticum aestivum genome assembly, chromosome: 7B.
LR865477.1:193107599-193107618
CGGCCGCCCGCTCGGAGGCGTCGCCGCGCA193107599GGACTTCAGGTACGACTCCGTCAGCTACGCTCAGAACTTCGACAACGGCG
Triticum aestivum genome assembly, chromosome: 7B.
LR865498.1:190611624-190611643
CGGCCGCCCGCTCGGAGGCGTCGCCGCGCA190611624GGACTTCAGGTACGACTCCGTCAGCTACGCTCAGAACTTCGACAACGGCG
Triticum aestivum genome assembly, chromosome: 7B.
LR865519.1:195164081-195164100
CGGCCGCCCGCTCGGAGGCGTCGCCGCGCA195164081GGACTTCAGGTACGACTCCGTCAGCTACGCTCAGAACTTCGACAACGGCG
Triticum aestivum genome assembly, chromosome: 7B.
LR865758.1:197747472-197747491
CGGCCGCCCGCTCGGAGGCGTCGCCGCGCA197747472GGACTTCAGGTACGACTCCGTCAGCTACGCTCAGAACTTCGACAACGGCG
Triticum aestivum genome assembly, chromosome: 7B.
LR877328.1:196655330-196655349
CGGCCGCCCGCTCGGAGGCGTCGCCGCGCA196655330GGACTTCAGGTACGACTCCGTCAGCTACGCTCAGAACTTCGACAACGGCG
Triticum aestivum genome assembly, chromosome: 7B.
LR878454.1:196681784-196681803
CGGCCGCCCGCTCGGAGGCGTCGCCGCGCA196681784GGACTTCAGGTACGACTCCGTCAGCTACGCTCAGAACTTCGACAACGGCG
Triticum aestivum genome assembly, chromosome: 7B.
LS992099.1:184484726-184484745
CGGCCGCCCGCTCGGAGGCGTCGCCGCGCA184484726GGACTTCAGGTACGACTCCGTCAGCTACGCTCAGAACTTCGACAACGGCG
Triticum turgidum subsp. durum genome assembly, chromosome: 7B.
LT934124.1:193906393-193906412
CGGCCGCCCGCTCGGAGGCGTCGCCGCGCA193906393GGACTTCAGGTACGACTCCGTCAGCTACGCTCAGAACTTCGACAACGGCG
Triticum aestivum genome assembly, chromosome: 7B.
OU015740.1:195593024-195593043
CGGCCGCCCGCTCGGAGGCGTCGCCGCGCA195593024GGACTTCAGGTACGACTCCGTCAGCTACGCTCAGAACTTCGACAACGGCG
Avena insularis genome assembly, chromosome: 3C.
OU342340.1:516272586-516272605
CGGCCTCCCGCTCGGCGGCGTCGCCGGGCA516272586GGACTTCAGGTACGACTCCGTCAGCTACGCACAGAACTTCGACAACGGCG
Triticum aestivum genome assembly, chromosome: 7B.
OU343182.1:199205238-199205257
CGGCCGCCCGCTCGGAGGCGTCGCCGCGCA199205238GGACTTCAGGTACGACTCCGTCAGCTACGCTCAGAACTTCGACAACGGCG
Triticum aestivum genome assembly, chromosome: 7B.
OU963891.1:194279977-194279996
CGGCCGCCCGCTCGGAGGCGTCGCCGCGCA194279977GGACTTCAGGTACGACTCCGTCAGCTACGCTCAGAACTTCGACAACGGCG
Triticum aestivum genome assembly, chromosome: 7B.
OV100756.1:191153667-191153686
CGGCCGCCCGCTCGGAGGCGTCGCCGCGCA191153667GGACTTCAGGTACGACTCCGTCAGCTACGCTCAGAACTTCGACAACGGCG
Triticum aestivum genome assembly, chromosome: 7B.
OW530329.1:191153667-191153686
CGGCCGCCCGCTCGGAGGCGTCGCCGCGCA191153667GGACTTCAGGTACGACTCCGTCAGCTACGCTCAGAACTTCGACAACGGCG
Cenchrus americanus genome assembly, chromosome: PMC23DB4.
OX387242.1:7079806-7079825
ACGTGATGGCCGCCAGGAGCCCAGGACGCA7079806GGACTTCAGGTACGACTCCGTCACCTATGCGCAGAACTCAACCACGGTGA
Bromus sterilis genome assembly, chromosome: 4.
OX465598.1:271390348-271390367
CGGCCTCCCGCTCGGCGGCGGCTCCGCGCA271390348GGACTTCAGGTACGACTCCGTCAGCTACGCCCAGAACTTCGACAACGGCG
Triticum aestivum genome assembly, chromosome: 7B.
OX637244.1:170000541-170000560
CGGCCGCCCGCTCGGAGGCGTCGCCGCGCA170000541GGACTTCAGGTACGACTCCGTCAGCTACGCTCAGAACTTCGACAACGGCG
Hordeum bulbosum genome assembly, chromosome: 7H_1.
OY737433.1:169730027-169730046
CGGCCTCCCGCTCGGAGGCGTCGCCGCGCA169730027GGACTTCAGGTACGACTCCGTCAGCTACGCCCAGAACTTCGACAACGGCG
Hordeum bulbosum genome assembly, chromosome: 7H_4.
OY737638.1:164236430-164236449
CGGCCTCCCGCTCGGAGGCGTCGCCGCGCA164236430GGACTTCAGGTACGACTCCGTCAGCTACGCCCAGAACTTCGACAACGGCG
Cenchrus americanus genome assembly, chromosome: Pg4.
OZ001400.1:9846960-9846979
ACGTGATGGCCGCCAGGAGCCCAGGACGCA9846960GGACTTCAGGTACGACTCCGTCACCTATGCGCAGAACTCAACCACGGTGA
Cenchrus americanus genome assembly, chromosome: Pg4.
OZ001408.1:10237202-10237221
ACGTGATGGCCGCCAGGAGCCCAGGACGCA10237202GGACTTCAGGTACGACTCCGTCACCTATGCGCAGAACTCAACCACGGTGA

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