GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 20:32:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Vitis vinifera, whole genome shotgun sequence, contig VV78X098781.4, clone ENTAV 115.
AM470837.1:32154-32175
TCTCTCTCTCTCTCTCTCTCTCTTTGTTGA32154GGAGACAATGCTAGCTTCAACAGTACTCTTTCTTCAATCCAAGATGCATGGT
Vitis vinifera cv. PN40024, annotated scaffold_500.assembly12x.
FN596294.1:482-503
TCTCTCTCTCTCTCTCTCTCTCTTTGTTGA482GGAGACAATGCTAGCTTCAACAGTACTCTTTCTTCAATCCAAGATGCATGGT
Vitis vinifera cv. PN40024, annotated scaffold_304.assembly12x.
FN596780.1:110721-110742
TCCATCTCTCTCTCTCTCTCTCTTTGTTGA110721GGAGACAATGCTAGCTTCAACAGTACTCTTTCTTC
VMC8D11 VMC library Vitis vinifera STS genomic, sequence tagged site.
BV722709.1:3-24
AC3TGTTGAAGCTAGCATTGTCTCCTCAACAAAGAGAGAGAGAGAGAGAGAGAGT
Vitis vinifera cultivar Pinot Noir 40024 chromosome 7.
CP126654.1:23096438-23096459
ACCATGCATCTTGGATTGAAGAAAGAGTAC23096438TGTTGAAGCTAGCATTGTCTCCTCAACAAAGAGAGAGAGAGAGAGAGATGGA
Vitis x doaniana cultivar PI 588149 chromosome 7.
CP128333.1:23637771-23637792
ACCATGCATCTTGGATTGAAGAAAGAGTAC23637771TGTTGAAGCTAGCATTGTCTCCTCAACAAAGAGAGAGAGAGAGAGAGAGATG
Vitis x doaniana cultivar PI 588149 chromosome 7.
CP128352.1:24296670-24296691
ACCATGCATCTTGGATTGAAGAAAGAGTAC24296670TGTTGAAGCTAGCATTGTCTCCTCAACAAAGAGAGAGAGAGATGGAAGTTAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGAGACAATGCTAGCTTCAACA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGAGACAATGCTAGCTTCAACA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.107 | 0.099 | search_plus_done; http://172.18.8.135:50400/match?q=GGAGACAATGCTAGCTTCAACA&k=0&no_gap=0&offset=0&limit=50
0.129 | 0.022 | search_minus_done; http://172.18.8.135:50400/match?q=TGTTGAAGCTAGCATTGTCTCC&k=0&no_gap=0&offset=0&limit=47
0.132 | 0.003 | cgi_end;

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