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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-10 09:11:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Mouse DNA sequence from clone RP23-358F6 on chromosome 2.
AL732493.17:28090-28109
ACCACTTGTGTCCCAGGGCAGGCAACTGGA28090GGAGAGAGAAAGGGGATTGGAGCAGGGAGAGCTGAGGACACACAGCCCCT
Mus musculus genome assembly, chromosome: 10.
OW971553.1:85279911-85279930
GATGGTGGGTTCATATGTAGAGAGAACAGG85279911GGAGAGAGAAAGGGGATTGGCAGTGGGAGGCAATCTCTAGAGACTTGGGA
Mus musculus genome assembly, chromosome: 2.
OW971562.1:90510200-90510219
ACCACTTGTGTCCCAGGGCAGGCAACTGGA90510200GGAGAGAGAAAGGGGATTGGAGCAGGGAGAGCTGAGGACACACAGCCCCT
Mus musculus genome assembly, chromosome: 2.
OW971574.1:90688580-90688599
ACCACTTGTGTCCCAGGGCAGGCAACTGGA90688580GGAGAGAGAAAGGGGATTGGAGCAGGGAGAGCTGAGGACACACAGCCCCT
Mus musculus genome assembly, chromosome: 10.
OW971581.1:85455439-85455458
GATGGTGGGTTCATATGTAGAGAGAACAGG85455439GGAGAGAGAAAGGGGATTGGCAGTGGGAGGCAATCTCTAGAGACTTGGGA
Mus musculus genome assembly, chromosome: 2.
OW971595.1:90314334-90314353
ACCACTTGTGTCCCAGGGCAGGCAACTGGA90314334GGAGAGAGAAAGGGGATTGGAGCAGGGAGAGCTGAGGACACACAGCCCCT
Mus musculus genome assembly, chromosome: 10.
OW971602.1:85323032-85323051
GATGGTGGGTTCATATGTAGAGAGAACAGG85323032GGAGAGAGAAAGGGGATTGGCAGTGGGAGGCAATCTCTAGAGACTTGGGA
Mus musculus domesticus genome assembly, chromosome: 10.
OW971616.1:85414481-85414500
GATGGTGGGTTCATATGTAGAGAGAACAGG85414481GGAGAGAGAAAGGGGATTGGCAGTGGGAGGCAATCTCTAGAGACTTGGGA
Mus musculus domesticus genome assembly, chromosome: 2.
OW971624.1:90216194-90216213
ACCACTTGTGTCCCAGGGCAGGCAACTGGA90216194GGAGAGAGAAAGGGGATTGGAGCAGGGAGAGCTGAGGACACACAGCCCCT
Mus musculus genome assembly, chromosome: 2.
OW971637.1:90416183-90416202
ACCACTTGTGTCCCAGGGCAGGCAACTGGA90416183GGAGAGAGAAAGGGGATTGGAGCAGGGAGAGCTGAGGACACACAGCCCCT
Mus musculus genome assembly, chromosome: 10.
OW971644.1:85719512-85719531
GATGGTGGGTTCATATGTAGAGAGAACAGG85719512GGAGAGAGAAAGGGGATTGGCAGTGGGAGGCAATCTCTAGAGACTTGGGA
Mus musculus molossinus genome assembly, chromosome: 2.
OW971659.1:90247353-90247372
ACCACTTGTGTCCCAGGGCAGGCAACTGGA90247353GGAGAGAGAAAGGGGATTGGAGCAGGGAGAGCTGAGGACACACAGCCCCT
Mus spretus genome assembly, chromosome: 2.
OW971679.1:92190257-92190276
ACCACTTCTGTCCCAGGGCAGGCAACTGGA92190257GGAGAGAGAAAGGGGATTGGAGCAGGGAGAGCTGAGGACACACAGCCCCT
Mus musculus genome assembly, chromosome: 10.
OW971700.1:85297908-85297927
GATGGTGGGTTCATATGTAGAGAGAACAGG85297908GGAGAGAGAAAGGGGATTGGCAGTGGGAGGCAATCTCTAGAGACTTGGGA
Mus musculus genome assembly, chromosome: 2.
OW971710.1:89700762-89700781
ACCACTTGTGTCCCAGGGCAGGCAACTGGA89700762GGAGAGAGAAAGGGGATTGGAGCAGGGAGAGCTGAGGACACACAGCCCCT
Mus musculus genome assembly, chromosome: 2.
OW971721.1:90382986-90383005
ACCACTTGTGTCCCAGGGCAGGCAACTGGA90382986GGAGAGAGAAAGGGGATTGGAGCAGGGAGAGCTGAGGACACACAGCCCCT
Mus musculus genome assembly, chromosome: 10.
OW971728.1:85277248-85277267
GATGGTGGGTTCATATGTAGAGAGAACAGG85277248GGAGAGAGAAAGGGGATTGGCAGTGGGAGGCAATCTCTAGAGACTTGGGA
Mus musculus genome assembly, chromosome: 2.
OW971742.1:90516611-90516630
ACCACTTGTGTCCCAGGGCAGGCAACTGGA90516611GGAGAGAGAAAGGGGATTGGAGCAGGGAGAGCTGAGGACACACAGCCCCT
Mus musculus genome assembly, chromosome: 10.
OW971749.1:85716523-85716542
GATGGTGGGTTCATATGTAGAGAGAACAGG85716523GGAGAGAGAAAGGGGATTGGCAGTGGGAGGCAATCTCTAGAGACTTGGGA
Mus musculus musculus genome assembly, chromosome: 2.
OW971763.1:90209696-90209715
ACCACTTGTGTCCCAGGGCAGGCAACTGGA90209696GGAGAGAGAAAGGGGATTGGAGCAGGGAGAGCTGAGGACACACAGCCCCT
Mus musculus genome assembly, chromosome: 2.
OW971784.1:90491103-90491122
ACCACTTGTGTCCCAGGGCAGGCAACTGGA90491103GGAGAGAGAAAGGGGATTGGAGCAGGGAGAGCTGAGGACACACAGCCCCT
Mus musculus genome assembly, chromosome: 10.
OW971791.1:85701686-85701705
GATGGTGGGTTCATATGTAGAGAGAACAGG85701686GGAGAGAGAAAGGGGATTGGCAGTGGGAGGCAATCTCTAGAGACTTGGGA
Mus musculus genome assembly, chromosome: 2.
OW971805.1:90412494-90412513
ACCACTTGTGTCCCAGGGCAGGCAACTGGA90412494GGAGAGAGAAAGGGGATTGGAGCAGGGAGAGCTGAGGACACACAGCCCCT
Mus musculus genome assembly, chromosome: 10.
OW971813.1:85677433-85677452
GATGGTGGGTTCATATGTAGAGAGAACAGG85677433GGAGAGAGAAAGGGGATTGGCAGTGGGAGGCAATCTCTAGAGACTTGGGA
Mus musculus genome assembly, chromosome: 2.
OW971855.1:90678738-90678757
ACCACTTGTGTCCCAGGGCAGGCAACTGGA90678738GGAGAGAGAAAGGGGATTGGAGCAGGGAGAGCTGAGGACACACAGCCCCT
Mus musculus genome assembly, chromosome: 10.
OW971863.1:85615006-85615025
GATGGTGGGTTCATATGTAGAGAGAACAGG85615006GGAGAGAGAAAGGGGATTGGCAGTGGGAGGCAATCTCTAGAGACTTGGGA
Mus musculus genome assembly, chromosome: 2.
OX389796.1:100078221-100078240
ACCACTTGTGTCCCAGGGCAGGCAACTGGA100078221GGAGAGAGAAAGGGGATTGGAGCAGGGAGAGCTGAGGACACACAGCCCCT
Mus musculus genome assembly, chromosome: 10.
OX389804.1:91824991-91825010
GATGGTGGGTTCATATGTAGAGAGAACAGG91824991GGAGAGAGAAAGGGGATTGGCAGTGGGAGGCAATCTCTAGAGACTTGGGA
Mus musculus genome assembly, chromosome: 10.
OX390154.1:87563563-87563582
GATGGTGGGTTCATATGTAGAGAGAACAGG87563563GGAGAGAGAAAGGGGATTGGCAGTGGGAGGCAATCTCTAGAGACTTGGGA
Mus musculus genome assembly, chromosome: 2.
OX439015.1:97500930-97500949
ACCACTTGTGTCCCAGGGCAGGCAACTGGA97500930GGAGAGAGAAAGGGGATTGGAGCAGGGAGAGCTGAGGACACACAGCCCCT
Mus musculus genome assembly, chromosome: 10.
OX439022.1:90503390-90503409
GATGGTGGGTTCATATGTAGAGAGAACAGG90503390GGAGAGAGAAAGGGGATTGGCAGTGGGAGGCAATCTCTAGAGACTTGGGA
Coregonus sp. 'balchen' genome assembly, chromosome: 7.
LR778259.1:15809969-15809988
GAAGAGAGAGATAAAGGTTAGAGAGGAGAA15809969GGAGAGAGAAAGGGGATTGGGTAGGAGAGAATGAAAGAGGGATGAAAGAG
Podarcis lilfordi genome assembly, chromosome: 14.
OX395139.1:6852676-6852695
GTTTCGTGGGATGGGGAAGAGGTTGGGCAA6852676GGAGAGAGAAAGGGGATTGGGTGGTTGAAAAAGGAGGAAGGGACAGAATG
Squalius cephalus genome assembly, chromosome: 7.
OX439253.1:23410938-23410957
GACAGTCGAGAGATGACAGGAAACGAGGTG23410938GGAGAGAGAAAGGGGATTGGATCAGGAAAGGTCCACGAGCCGGGACTCGA
TSA: Beta vulgaris Locus_11714_Transcript_9/11_Confidence_0.131_Length_842 mRNA sequence.
JP503587.1:783-802
GCGTGGGTAAGATTGAAGAAAGTAGAAAGA783GGAGAGAGAAAGGGGATTGGATTGGGTAGGAAGGAGGGAAGAAGGGGGTA
TSA: Plecoglossus altivelis SeqIndex0014135.Plalmacro mRNA sequence.
JP734983.1:9-28
GGAGGGGC9GGAGAGAGAAAGGGGATTGGTTAGGAGGGGGGACAGGTCAGTAGATGGAG
1M0299H05F Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0299H05 F, genomic survey sequence.
AZ478754.1:278-297
ACCACTTGTGTCCCAGGGCAGGCAACTGGA278GGAGAGAGAAAGGGGATTGGAGCAGGGAGAGCTGAGGACACACAGCCCCT
AT_SBa0012I21.f AT__SBa Amborella trichopoda genomic clone AT_SBa0012I21 5', genomic survey sequence.
HR625317.1:205-224
GAGAAAAAGGAAAGCGTTGGTTTTGAGCGA205GGAGAGAGAAAGGGGATTGGGGGTTTAGAGAGAGGAGGGAGAGATGGTTC
GTZT5298.b1 GTZT marine metagenome genomic, genomic survey sequence.
KG335446.1:279-298
CCGTGGCTTGTATAAGGTGGTGGGCTGTGA279GGAGAGAGAAAGGGGATTGGGGTGTCTTGTTTGGGATATCTATAGTTGTT
Spirodela polyrhiza strain 9509 chromosome 12, partial sequence.
CP019104.1:3464112-3464131
TTTGATTGGGGGTTAAAAGGGAAGAGAAGA3464112GGAGAGAGAAAGGGGATTGGGTGAACCACGACGGCTAGAGCACAGCAATG
Juncus effusus genome assembly, chromosome: 10.
OX326982.1:7744942-7744961
TTAGATATGAGCACCCGTTGCTCGTGGAGA7744942GGAGAGAGAAAGGGGATTGGGTGCTGCCAATTAGGGTTTATTCGCCTCCT
Hedera helix genome assembly, chromosome: 8.
OX359271.1:42763458-42763477
ATGAGGGAGAAGAAGGTCAAGAAGAAGCGA42763458GGAGAGAGAAAGGGGATTGGTTTCTGTTGCATGAGTCTAAGCATGTGGTG
Hedera helix genome assembly, chromosome: 22.
OX359285.1:30878272-30878291
CTGAGGGAGAAGGGGGTGAAGAGGAGGGGA30878272GGAGAGAGAAAGGGGATTGGTTTTTGTTGAAGGATTCTAAGCATGTGGTA
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 5.
OX392551.1:16787332-16787351
GCGTGGGTAAGATTGAAGAAAGTAGAAAGA16787332GGAGAGAGAAAGGGGATTGGATTGGGTAGGAAGGAGGGAAGGAGTGGGTG
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 5.
OX392560.1:16830840-16830859
GCGTGGGTAAGATTGAAGAAAGTAGAAAGA16830840GGAGAGAGAAAGGGGATTGGATTGGGTAGGAAGGAGGGAAGGAGTGGGTG
Cornus suecica genome assembly, chromosome: 1.
OY998238.1:16238408-16238427
CATCAAAGACTCAAAATTGGTGATCAGACA16238408GGAGAGAGAAAGGGGATTGGCATCAGAGAGAGAGAGAGAAGGGGATCTGA
Sepiola atlantica genome assembly, chromosome: 25.
OY744539.1:65726329-65726348
CGGTGCTCAGGAATCCAGTGGATAAAGTCA65726329GGAGAGAGAAAGGGGATTGGTAGCAGAGTATTAGGAGGGAATAGAGAAGA
Onchidella celtica genome assembly, chromosome: 10.
OZ007576.1:41441941-41441960
GAAATAGAGAAGAGAAAGTGAGAAAAAAAG41441941GGAGAGAGAAAGGGGATTGGGGGGGGGGATGGGGGAATGGAGAAAGTCCT
Mus musculus BAC clone RP23-418E15 from chromosome 10, complete sequence.
AC124504.3:96984-97003
TCCCAAGTCTCTAGAGATTGCCTCCCACTG96984CCAATCCCCTTTCTCTCTCCCCTGTTCTCTCTACATATGAACCCACCATC
Apodemus sylvaticus genome assembly, chromosome: X.
OX359302.1:139666754-139666773
GTATGTCCTAAAGATTGCCCCTGTCTCCAA139666754CCAATCCCCTTTCTCTCTCCACTGCTCTCTTTACAGATGACACCCCCACA
Notamacropus eugenii clone ME_KBa-311C4, complete sequence.
AC147533.3:27635-27654
GAGAGTAAAGTAATTAGAACTGCATGTTCT27635CCAATCCCCTTTCTCTCTCCTGGAGCAACCCCATATGCATTTACAAATCT
Capricornis sumatraensis isolate serow.1 chromosome 2.
CP135627.1:33105178-33105197
TAAAATTCTGCATTCACTTAAGGTTTTCCT33105178CCAATCCCCTTTCTCTCTCCCCAGCCAGGCTCCATGTTTGGGGGAAGCCG
Rhinatrema bivittatum genome assembly, chromosome: 2.
LR584388.1:614551293-614551312
CAATTTACACACAGTCTCTGCACAGACAGT614551293CCAATCCCCTTTCTCTCTCCCCAGGGTGAATTCTCAATACTCTTCCTGGT
Podarcis cretensis genome assembly, chromosome: 14.
OX638162.1:49237729-49237748
TATTCTGCCCCTTCCTCCTTTTTCAACCAC49237729CCAATCCCCTTTCTCTCTCCTTGCCCAACCTCTTCCCCTCCCACGATACC
atr01-11ms1-g04 Atr01 Amborella trichopoda cDNA clone atr01-11ms1-g04 5', mRNA sequence.
CD482020.2:97-116
GTGAGAAAGTTGACTCAAATCTGAGATGCC97CCAATCCCCTTTCTCTCTCCCGCCACGGGTGGCAATTGCCGCCGCGCTCT
Atr01b_102_H09_C010.g1 FGP Male Amborella trichopoda Amborella trichopoda cDNA clone 122L0d_O17 5', mRNA sequence.
FD430819.1:288-307
GTGTGAGAAAGTTGACTCAAATCGAGAGCC288CCAATCCCCTTTCTCTCTCCCCCACGGTCTGCAATTCCCCCCCCCCCTCT
TSA: Beta vulgaris Locus_11714_Transcript_3/11_Confidence_0.096_Length_475 mRNA sequence.
JP503582.1:13-32
TTCCTACCCAAT13CCAATCCCCTTTCTCTCTCCTCTTTCTACTTTCTTCAATCTTACCCACGC
TSA: Beta vulgaris Locus_11714_Transcript_10/11_Confidence_0.076_Length_368 mRNA sequence.
JP503588.1:13-32
TTCCTACCCAAT13CCAATCCCCTTTCTCTCTCCTCTTTCTACTTTCTTCAATCTTACCCACGC
CH216-130C12_RM1.1 CH216 Xenopus tropicalis genomic clone CH216-130C12, genomic survey sequence.
CL073847.1:720-739
CTTATTTCCATCCCCAACTCTAAAATCACT720CCAATCCCCTTTCTCTCTCCTCTCCTCTCTACCAACTACCACCTCTCTCT
Oryza sativa indica subgroup Inn Ma Yebaw DNA, chromosome: 2.
AP027386.1:26062374-26062393
CACATGTCATCCTCTCTCCTTCCTCTTCTC26062374CCAATCCCCTTTCTCTCTCCGACCAATGGAGCAGGGCGAGCGGCGGTCAG
Oryza sativa Indica Group cultivar Shuhui498 chromosome 2, partial sequence.
CP018158.1:26119506-26119525
CACATGTCATCCTCTCTCCTTCCTCTTCTC26119506CCAATCCCCTTTCTCTCTCCGACCAATGGAGCAGGGCGAGCGGCGGTCAG
Luzula sylvatica genome assembly, chromosome: 2.
OX326957.1:34439203-34439222
AGGAGGCGAATAAACCCTAATTGGCAAAAC34439203CCAATCCCCTTTCTCTCTCCTCTCCACAAGCAATGGGTGCTCATATCTAT
Oryza sativa genome assembly, chromosome: 2.
OX637247.1:25193480-25193499
CACATGTCATCCTCTCTCCTTCCTCTTCTC25193480CCAATCCCCTTTCTCTCTCCGACCAATGGAGCAGGGCGAGCGGCGGTTAG
Ajuga chamaepitys genome assembly, chromosome: 5.
OY282499.1:33399911-33399930
ACTAGACATTATTTTGATTTTGAAGCATAT33399911CCAATCCCCTTTCTCTCTCCAAACGAATTAAATCACTCTCTCCCATCGAT
Anisus vortex genome assembly, chromosome: 6.
OX421497.1:33730057-33730076
TCCCCTTCTCCCAATGCCCAATTCTCTCTC33730057CCAATCCCCTTTCTCTCTCCCTATCTGTACTGCCCCATTACATCTCATTC
Pyrrhosoma nymphula genome assembly, chromosome: 8.
OY754335.1:72429034-72429053
AACACAGCATCGAGAACCGCATTCGCTTTC72429034CCAATCCCCTTTCTCTCTCCCTCCCCTCTAGCGATTCCGAAATCGTCCGT

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