GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 05:31:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Solanum melongena mRNA, clone: PED07H09, 5'end, expressed in peduncle at anthesis.
FS037284.1:211-230
GTTTACGGAGGAGAGATACCTGATGAAGAA211GGAGAGATGGATGCCGAATATGACACATCTGCTGCTGCTGCTGAATCTGA
Solanum melongena mRNA, clone: YFR01A13, 5'end, expressed in fruit at 2w after anthesis.
FS094417.1:246-265
GTTTACGGAGGAGAGATACCTGATGAAGAA246GGAGAGATGGATGCCGAATATGACACATCTGCTGCTGCTGCTGAATCTGA
CHO_OF841xo05r1.ab1 CHO_OF Nicotiana tabacum genomic 3', genomic survey sequence.
ET834405.1:340-359
GTTTACGGAGGAGACATACCCGATGAAGAA340GGAGAGATGGATGCCGAATATGATGAAACATCTGAAGCCTCTGATACCTA
Solanum dulcamara genome assembly, chromosome: 7.
OX359258.1:27992280-27992299
GATTCATCAGCAGCAGCAGCAGATGTATCA27992280TATTCGGCATCCATCTCTCCTTCTTCATCAGGTATTTCTCCTCCGTAAAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGAGAGATGGATGCCGAATA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGAGAGATGGATGCCGAATA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.281 | 0.272 | search_plus_done; http://172.18.8.135:50400/match?q=GGAGAGATGGATGCCGAATA&k=0&no_gap=0&offset=0&limit=50
0.298 | 0.017 | search_minus_done; http://172.18.8.135:50400/match?q=TATTCGGCATCCATCTCTCC&k=0&no_gap=0&offset=0&limit=47
0.298 | 0.001 | cgi_end;

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