GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 05:40:04, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 99 unordered pieces.
FJ789646.1:807741-807760
TTTACAGCTTAGAGTTAGACTTATATTATA807741GGAGATGCGATAACAGTGTTGTGTAGTACTTCTCTGAAATCTATCCAGCT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB070L01, complete sequence.
AC189445.2:113415-113434
TTTGCAGCTTAGAGTTAGACTTATATTATA113415GGAGATGCGATAACAGTGTTGTGTAGTACTTCTCTGAAATCTATCCAGCT
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:10939885-10939904
TTTACAGCATAGAGTTAGACTTATATTATA10939885GGAGATGCGATAACAGTGTTGTGTAGTACTTCTCTGAAATCTATCCAGCT
Eupithecia tripunctaria genome assembly, chromosome: 15.
OY041614.1:3267222-3267241
ATCTATATAGCTTTTTTTGTATTTTTAGAA3267222GGAGATGCGATAACAGTGTTTGGTGGGCACCAAGTGCAACTTTGCATCTC
JBnY029J22F Brassica napus BAC library JBnY Brassica napus genomic clone JBnY029J22, genomic survey sequence.
DU103851.1:820-839
AGCTGGATAGATTTCAGAGAAGTACTACAC820AACACTGTTATCGCATCTCCTATAATATAAGTCTAACTCTATGCTGTAAA
KBrB047K13R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB047K13, genomic survey sequence.
DX046121.1:499-518
AGCTGGATAGATTTCAGAGAAGTACTACAC499AACACTGTTATCGCATCTCCTATAATATAAGTCTAACTCTAAGCTGCAAA
KBrB089D13R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB089D13, genomic survey sequence.
DX077582.1:499-518
AGCTGGATAGATTTCAGAGAAGTACTACAC499AACACTGTTATCGCATCTCCTATAATATAAGTCTAACTCTAAGCTGCAAA
Brassica rapa subsp. pekinensis clone KBrH136O12, complete sequence.
FP340390.1:60250-60269
AGCTGGATAGATTTCAGAGAAGTACTACAC60250AACACTGTTATCGCATCTCCTATAATATAAGTCTAACTCTAAGCTGCAAA
Brassica napus genome assembly, chromosome: A07.
HG994361.1:18684285-18684304
AGCTGGATAGATTTCAGAGAAGTACTACAC18684285AACACTGTTATCGCATCTCCTATAATATAAGTCTAACTCTATGCTGTAAA
Eupithecia tripunctaria genome assembly, chromosome: 5.
OY041604.1:3001411-3001430
GAGATGCGAATTTGCACTTGGTGGCCACCA3001411AACACTGTTATCGCATCTCCTTCTAAACTATACAAAAAAAACTAAACAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGAGATGCGATAACAGTGTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGAGATGCGATAACAGTGTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.111 | 0.102 | search_plus_done; http://172.18.8.135:50400/match?q=GGAGATGCGATAACAGTGTT&k=0&no_gap=0&offset=0&limit=50
0.205 | 0.094 | search_minus_done; http://172.18.8.135:50400/match?q=AACACTGTTATCGCATCTCC&k=0&no_gap=0&offset=0&limit=46
0.209 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).