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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 08:16:40, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sequence 137405 from Patent WO2008034648.
FB918132.1:661-680
CTTCGCCATCCCAATATAGTCCAATTCTTA661GGAGCCGTAACCGAAAGAAAGCCCCTTATGTTAATCACAGAGTACTTACG
Sequence 137405 from Patent EP2090662.
HB788191.1:661-680
CTTCGCCATCCCAATATAGTCCAATTCTTA661GGAGCCGTAACCGAAAGAAAGCCCCTTATGTTAATCACAGAGTACTTACG
Brassica oleracea var. viridis mRNA, clone: KALE-078D11, 5' end sequence.
DK485451.1:801-820
CTTCGCCATCCCAATATAGTCCAATTCTTA801GGAGCCGTAACCGAAAGAAAGCCCCTTATGTTAATCACAGAGTAC
Brassica oleracea var. viridis mRNA, clone: KALE-112P11, 5' end sequence.
DK498753.1:370-389
CTTCGCCATCCCAATATAGTCCAATTCTTA370GGAGCCGTAACCGAAAGAAAGCCCCTTATGTTAATCACAGAGTACTTACG
Brassica oleracea var. viridis mRNA, clone: KALE-078D11, 3' end sequence.
DK545043.1:23-42
TCCCAATATAGTCCAATTCTTA23GGAGCCGTAACCGAAAGAAAGCCCCTTATGTTAATCACAGAGTACTTACG
Brassica oleracea var. viridis mRNA, clone: KALE-112P11, 3' end sequence.
DK558325.1:27-46
TCGCATCCCAATATAGTCCAATTCTA27GGAGCCGTAACCGAAAGAAAGCCCCTTATGTTAATCACAGAGTACTTACG
0209832 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV143899.1:440-459
CTTCGCCATCCCAATATAGTCCAATTCTTA440GGAGCCGTAACCGAAAGAAAGCCCCTTATGTTAATCACAGAGTACTTACG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_5356.
FX699080.1:895-914
CTTCGCCATCCGAATATAGTGCAGTTCTTA895GGAGCCGTAACCGAAAGAAAGCCCCTTATGTTAATCACCGAGTACTTACG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_7303.
FX733383.1:860-879
CTTCGCCATCCGAATATAGTGCAGTTCTTA860GGAGCCGTAACCGAAAGAAAGCCACTTATGTTAATCACAGAGTACTTACG
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:6590989-6591008
CTTCGCCATCCGAATATAGTGCAGTTCTTA6590989GGAGCCGTAACCGAAAGAAAGCCACTTATGTTAATCACAGAGTACTTACG
Capsella bursa-pastoris isolate WGS_leaf chromosome 1.
CP144183.1:4656221-4656240
CTTCGTCATCCTAACATAGTGCAATTCTTA4656221GGAGCCGTAACCGAAAGAAAGCCTCTTATGTTAATCACTGAATACTTGCG
Capsella bursa-pastoris isolate WGS_leaf chromosome 9.
CP144191.1:4642851-4642870
CTTCGTCATCCTAACATAGTGCAATTCTTA4642851GGAGCCGTAACCGAAAGAAAGCCTCTTATGTTAATCACTGAATACTTGCG
Brassica napus genome assembly, chromosome: A06.
HG994360.1:5540989-5541008
CTTCGCCATCCGAATATAGTGCAGTTCTTA5540989GGAGCCGTAACCGAAAGAAAGCCACTTATGTTAATCACAGAGTACTTACG
Brassica napus genome assembly, chromosome: C05.
HG994369.1:6387117-6387136
CTTCGCCATCCCAATATAGTCCAATTCTTA6387117GGAGCCGTAACCGAAAGAAAGCCCCTTATGTTAATCACAGAGTACTTACG
Brassica rapa genome, scaffold: A06.
LR031569.1:5441009-5441028
CTTCGCCATCCGAATATAGTGCAGTTCTTA5441009GGAGCCGTAACCGAAAGAAAGCCACTTATGTTAATCACAGAGTACTTACG
Brassica oleracea HDEM genome, scaffold: C5.
LR031877.1:6201875-6201894
CTTCGCCATCCCAATATAGTCCAATTCTTA6201875GGAGCCGTAACCGAAAGAAAGCCCCTTATGTTAATCACAGAGTACTTACG
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:5544387-5544406
CTTCGCCATCCGAATATAGTGCAGTTCTTA5544387GGAGCCGTAACCGAAAGAAAGCCACTTATGTTAATCACAGAGTACTTACG
Arabis alpina genome assembly, chromosome: 1.
LT669788.1:11764798-11764817
CTCCGCCATCCGAATATAGTGCAATTCTTA11764798GGAGCCGTAACCGAAAGAAAGCCCCTTATGTTAATCACTGAATACTTACG
0091388 Brassica napus Cold acclimation - dark Brassica napus cDNA, mRNA sequence.
EV193903.1:701-720
CGTAAGTACTCTGTGATTAACATAAGGGGC701TTTCTTTCGGTTACGGCTCCT
BONER38TF BO_1.6_2_KB_tot Brassica oleracea genomic clone BONER38, genomic survey sequence.
BZ472136.1:41-60
GCGTAAGTACTCTGTGATTACATAAGGGGC41TTTCTTTCGGTTACGGCTCCTAAGAATTGGACTATATTGGGATGGCGAAG
BOOAJ46TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BOOAJ46, genomic survey sequence.
BZ472942.1:349-368
CGTAAGTACTCTGTGATTAACATAAGGGGC349TTTCTTTCGGTTACGGCTCCTAAGAATTGGACTATATTGGGATGGCGAAG
Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:52941271-52941290
CGTAAGTACTCTGTGATTAACATAAGGGGC52941271TTTCTTTCGGTTACGGCTCCTAAGAATTGGACTATATTGGGATGGCGAAG
Turicibacter sanguinis strain MOL361 chromosome, complete genome.
CP053187.1:2908756-2908775
TAAATGAAATACTTTAATTTCTTTAACGCA2908756TTTCTTTCGGTTACGGCTCCCCATCTTTTTATAAACACCCACAGGTTGTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GGAGCCGTAACCGAAAGAAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GGAGCCGTAACCGAAAGAAA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.634 | 0.625 | search_plus_done; http://172.18.8.135:50400/match?q=GGAGCCGTAACCGAAAGAAA&k=0&no_gap=0&offset=0&limit=50
0.844 | 0.211 | search_minus_done; http://172.18.8.135:50400/match?q=TTTCTTTCGGTTACGGCTCC&k=0&no_gap=0&offset=0&limit=32
0.847 | 0.003 | cgi_end;

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