GGGenome | Results

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Homo sapiens BAC clone RP11-183F15 from 2, complete sequence.
AC092838.4:51975-51993

AAACAATAGCATCTCCTCTGAGCTACCTGT51975GGAGGAGTCTGCAAATGCCTTTGGCAAAATTATAAATTGTTTAGAATTG

Homo sapiens DNA, chromosome 2, nearly complete genome.
AP023462.1:43423256-43423274

AAACAATAGCATCTCCTCTGAGCTACCTGT43423256GGAGGAGTCTGCAAATGCCTTTGGCAAAATTATAAATTGTTTAGAATTG

Homo sapiens isolate CHM13 chromosome 2.
CP068276.2:43382516-43382534

AAACAATAGCATCTCCTCTGAGCTACCTGT43382516GGAGGAGTCTGCAAATGCCTTTGGCAAAATTATAAATTGTTTAGAATTG

Homo sapiens isolate NA24385 chromosome 2.
CP139519.1:43392724-43392742

AAACAATAGCATCTCCTCTGAGCTACCTGT43392724GGAGGAGTCTGCAAATGCCTTTGGCAAAATTATAAATTGTTTAGAATTG

Homo sapiens isolate NA24385 chromosome 2.
CP139542.1:43408309-43408327

AAACAATAGCATCTCCTCTGAGCTACCTGT43408309GGAGGAGTCTGCAAATGCCTTTGGCAAAATTATAAATTGTTTAGAATTG

Podarcis lilfordi genome assembly, chromosome: 10.
OX395135.1:36304144-36304162

ATCCACCCATGTCTTTAAAGTGGAATGTGG36304144GGAGGAGTCTGCAAATGCCCATGTCCCAGTTCATTCAAAAAATTTGGTG

Eukaryotic synthetic construct chromosome 2.
CP034498.1:43594297-43594315

AAACAATAGCATCTCCTCTGAGCTACCTGT43594297GGAGGAGTCTGCAAATGCCTTTGGCAAAATTATAAATTGTTTAGAATTG

Eukaryotic synthetic construct chromosome 2.
CP034523.1:43594297-43594315

AAACAATAGCATCTCCTCTGAGCTACCTGT43594297GGAGGAGTCTGCAAATGCCTTTGGCAAAATTATAAATTGTTTAGAATTG

Ipomoea nil cDNA clone:jmsf36a04, 5' end.
CJ746960.1:247-265

AGTTGTGCCTTCTCTAGCTGCCTACGGTAG247GGAGGAGTCTGCAAATGCCTCTAGAGCTTGGATTTCTGGTCTCTTTGCT

BJ02028B09 BJ02 Capsicum annuum cDNA 5', mRNA sequence.
CO908207.1:47-65

TAAAGGATATGGCTTTGTCCAGTTTGGGTC47GGAGGAGTCTGCAAATGCCGCTATTGAGAAGCTTAATGGGATCATGGTT

Capsicum annuum Takanotsume DNA, chromosome 1, sequence.
AP026696.1:10056763-10056781

TAAAGAATATGATTTTGTCCAGTTTGAATC10056763GGAGGAGTCTGCAAATGCCGCTAATAAGAAGTTTAATGGGACCATGGGT

Capsicum annuum Takanotsume DNA, chromosome 2, sequence.
AP026697.1:130660917-130660935

TAAAGGATATGACTTTGTCTAGTTTGGGTC130660917GGAGGAGTCTGCAAATGCCGCTATTGAGAAGCTTAATGGGACCATTGTT

Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 2.
CP124730.1:131476742-131476760

TAAAGGATATGACTTTGTCTAGTTTGGGTC131476742GGAGGAGTCTGCAAATGCCGCTATTGAGAAGCTTAATGGGACCATTGTT

Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 1.
CP124731.1:10376537-10376555

TAAAGAATATGATTTTGTCCAGTTTGAATC10376537GGAGGAGTCTGCAAATGCCGCTAATAAGAAGTTTAATGGGACCATGGGT

Hordeum vulgare subsp. vulgare genome assembly, chromosome: 5H.
LR812265.1:180151048-180151066

TGATGATGCTCGGGATTCAGACAATGAGAT180151048GGAGGAGTCTGCAAATGCCTTCTTATGAAATGTTGGAGTCTTCAAAATG

Hordeum vulgare subsp. vulgare genome assembly, chromosome: 5H.
LR828112.1:165300884-165300902

TGATGATGCTCGGGATTCAGACAATGAGAT165300884GGAGGAGTCTGCAAATGCCTTCTTATGAAATGTTGGAGTCTTCAAAATG

Hordeum vulgare genome assembly, chromosome: 5H.
OX459913.1:175599750-175599768

TGATGATGCTCGGGATTCAGACAATGAGAT175599750GGAGGAGTCTGCAAATGCCTTCTTATGAAATGTTGGAGTCTTCAAAATG

Hordeum vulgare genome assembly, chromosome: 5H.
OX459934.1:176622834-176622852

TGATGATGCTCGGGATTCAGACAATGAGAT176622834GGAGGAGTCTGCAAATGCCTTCTTATGAAATGTTGGAGTCTTCAAAATG

Hordeum vulgare genome assembly, chromosome: 5H.
OX460023.1:173533636-173533654

TGATGATGCTCGGGATTCAGACAATGAGAT173533636GGAGGAGTCTGCAAATGCCTTCTTATGAAATGTTGGAGTCTTCAAAATG

Hordeum vulgare genome assembly, chromosome: 5H.
OX460072.1:175879052-175879070

TGATGATGCTCGGGATTCAGACAATGAGAT175879052GGAGGAGTCTGCAAATGCCTTCTTATGAAATGTTGGAGTCTTCAAAATG

Hordeum vulgare genome assembly, chromosome: 5H.
OX460170.1:177488109-177488127

TGATGATGCTCGGGATTCAGACAATGAGAT177488109GGAGGAGTCTGCAAATGCCTTCTTATGAAATGTTGGAGTCTTCAAAATG

Hordeum vulgare genome assembly, chromosome: 5H.
OX460282.1:172263786-172263804

TGATGATGCTCGGGATTCAGACAATGAGAT172263786GGAGGAGTCTGCAAATGCCTTCTTATGAAATGTTGGAGTCTTCAAAATG

Hordeum bulbosum genome assembly, chromosome: 3H_2.
OY737418.1:14623008-14623026

TGATGATGCTCGTGATTCGGACGATGAGAT14623008GGAGGAGTCTGCAAATGCCTTCTATGAAATGCTGGAGTCTTCAAACCGT

Hordeum bulbosum genome assembly, chromosome: 3H_1.
OY737613.1:13833646-13833664

TGATGATGCTCGTGATTCGGACGATGAGAT13833646GGAGGAGTCTGCAAATGCCTTCTATGAAATGCTGGAGTCTTCAAAATGT

Sphagnum contortum genome assembly, chromosome: 5.
OY987280.1:18291210-18291228

GGTGGGTGGTCTTTGGGGTTTGATCGCTGG18291210GGAGGAGTCTGCAAATGCCAAATATCTATACTTCATGAACTGTGTATAG

Lymantria dispar genome assembly, chromosome: Z.
OY755125.1:42348494-42348512

TACATTATCTAAGGCGATCGATGCCATTGG42348494GGAGGAGTCTGCAAATGCCCAGGGCCTAAAACGAGTCATCACAACAGTT

Acomys kempi genome assembly, chromosome: 15.
OU015369.1:44668333-44668351

TTAAACTCAAGGGGCTGCTGGGGGTGGGGG44668333GGCATTTGCAGACTCCTCCTTGGCTGTGCTGAAACTCTACCATGAGGTC

Acomys dimidiatus genome assembly, chromosome: 15.
OU015388.1:46201111-46201129

CTGGGAGGTGGGGGTGGGGGTGGGGCGGGT46201111GGCATTTGCAGACTCCTCCTTGGCTGTGCTGAAACTCTATCATGAGGTC

Sequence 12 from Patent WO03093310.
AX951695.1:218862-218880

CAATTCTAAACAATTTATAATTTTGCCAAA218862GGCATTTGCAGACTCCTCCACAGGTAGCTCAGAGGAGATGCTATTGTTT

JP 2006510344-A/6: Novel nucleic acid sequences and proteins of tumors and neoplasias of the thyroid gland.
DD349238.1:218862-218880

CAATTCTAAACAATTTATAATTTTGCCAAA218862GGCATTTGCAGACTCCTCCACAGGTAGCTCAGAGGAGATGCTATTGTTT

Sequence 12 from Patent WO2003093310.
GN374938.1:218862-218880

CAATTCTAAACAATTTATAATTTTGCCAAA218862GGCATTTGCAGACTCCTCCACAGGTAGCTCAGAGGAGATGCTATTGTTT

JP 2006518991-A/151: Novel Compositions and Methods in Cancer.
HV186521.1:198584-198602

CAATTCTAAACAATTTATAATTTTGCCAAA198584GGCATTTGCAGACTCCTCCACAGGTAGCTCAGAGGAGATGCTATTGTTT

TSA: Capsicum annuum MGMT_Contig1433, mRNA sequence.
JW051677.1:1024-1042

AACCATGATCCCATTAAGCTTCTCAATAGC1024GGCATTTGCAGACTCCTCCGACCCAAACTGGACAAAGCCATATCCTTTA

TSA: Capsicum annuum MGMT_Contig27872, mRNA sequence.
JW078116.1:3066-3084

AACAATGGTCCCATTAAGCTTCTCAATAGC3066GGCATTTGCAGACTCCTCCGACCCAAACTAGACAAAGTCATATCCTTTA

Capsicum annuum Takanotsume DNA, chromosome 10, sequence.
AP026705.1:196029608-196029626

AACCATGATCCCATTAAGCTTCTCAATAGC196029608GGCATTTGCAGACTCCTCCGACCCAAACTGGACAAAGCCATATCCTTTA

Ipomoea trifida cultivar NCNSP0306 chromosome 12.
CP025655.1:17135448-17135466

AGCAAAGAGACCAGAAATCCAAGCTCTAGA17135448GGCATTTGCAGACTCCTCCCTACCGTAGGCGGCAAGAGAAGGCACAACT

Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 10.
CP124722.1:200434363-200434381

AACCATGATCCCATTAAGCTTCTCAATAGC200434363GGCATTTGCAGACTCCTCCGACCCAAACTGGACAAAGCCATATCCTTTA

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Debug Info:

0.009 | 0.009 | search_start;
0.218 | 0.209 | search_plus_done; http://172.18.8.135:50400/match?q=GGAGGAGTCTGCAAATGCC&k=0&no_gap=0&offset=0&limit=50
0.350 | 0.132 | search_minus_done; http://172.18.8.135:50400/match?q=GGCATTTGCAGACTCCTCC&k=0&no_gap=0&offset=0&limit=24
0.357 | 0.007 | cgi_end;

Summary:

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