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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-10 18:38:03, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sciurus carolinensis genome assembly, chromosome: 16.
LR738606.1:47913303-47913322
CAATCCAAATGGCTTGGACTTGAGGATTGT47913303GGAGGTAGGGGAAGAAGAAGTGACATATCATTGGATTCTGGATATATTTT
Acomys percivali genome assembly, chromosome: 4.
OU015745.1:31359826-31359845
ATCATAGAGAGAGGTGGAGGAGAGAGAAGG31359826GGAGGTAGGGGAAGAAGAAGCAGGATGAAGAGGGGAAGTGGGAAAAGGGG
Chionomys nivalis genome assembly, chromosome: 16.
OX465464.1:42565033-42565052
GGTAGAGATAAGTGGGAAAGACTAAGAGGA42565033GGAGGTAGGGGAAGAAGAAGAGAGAAAGGAAGGAAGGAAGGAAGGAAGGA
Orcinus orca genome assembly, chromosome: 1.
OW443360.1:25133026-25133045
CATTTTATTTCAATTTGCATTTTGCTGAGG25133026GGAGGTAGGGGAAGAAGAAGGGAAAGAATGAAAATGAGATGGGGTAGGAA
Pseudochaenichthys georgianus genome assembly, chromosome: 7.
LR792552.1:16752219-16752238
GAGACATTTGGAGACACTGAGAAGACAGAA16752219GGAGGTAGGGGAAGAAGAAGGGGAGGCCTGCGGAGGAGAAGCCAGGGTGG
Arachis hypogaea cultivar Shitouqi chromosome B01.
CP030993.1:125466848-125466867
GGAGGTAGAGGAAGAAGAAGAGGAGCCAGA125466848GGAGGTAGGGGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAG
Arachis hypogaea cultivar Shitouqi chromosome B02.
CP030994.1:66102176-66102195
GGGCTGGGGTTGGTGGGTTGCTTTGGGTTG66102176GGAGGTAGGGGAAGAAGAAGAAAGAAAAGGGTTTAGAGGTTGAAGGCGCG
Arachis ipaensis cultivar K30076 chromosome 01.
CP049892.1:125467092-125467111
GGAGGTAGAGGAAGAAGAAGAGGAGCCAGA125467092GGAGGTAGGGGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
Arachis ipaensis cultivar K30076 chromosome 02.
CP049893.1:65389746-65389765
GGGCTGGGGTTGGTGGGTTGCTTTGGGTTG65389746GGAGGTAGGGGAAGAAGAAGAAAGAAAAGGGTTTAGAGGTTGAAGGCGCG
Hedera helix genome assembly, chromosome: 16.
OX359279.1:43135316-43135335
GGCAGGTTAGAGGGGGAGACGGGAAGGGAG43135316GGAGGTAGGGGAAGAAGAAGAAGGAAGATCTAAATTAAAGGGATCATGAT
Sambucus nigra genome assembly, chromosome: 3.
OX422209.1:72353746-72353765
AGGTGTAGGTCGAGGAAGAGAGGCGGAGGG72353746GGAGGTAGGGGAAGAAGAAGCCTGATTCTTGAGAGAGAGAGATAGATAGA
Inga oerstediana genome assembly, chromosome: 1.
OY723399.1:54182315-54182334
AAAAAATCCTTATCCTTCCTCACCATCACC54182315GGAGGTAGGGGAAGAAGAAGAGGAGGAGACGAGGGGTCAAAAAATAGATT
Alisma plantago-aquatica genome assembly, chromosome: 3.
OY856411.1:1214848110-1214848129
CTTATGCCAAGTGTTGTGTGGCGTCGTTCT1214848110GGAGGTAGGGGAAGAAGAAGCAATTGACAGTGTCTTTGGGTTCGTGGGAG
Nostoc punctiforme PCC 73102 strain ATCC 29133 chromosome, complete genome.
CP001037.1:5467901-5467920
TAGAGTTATTTTTAGGGAGTAGGGAGTAGG5467901GGAGGTAGGGGAAGAAGAAGTATTGAGCCATACCCCATGCCCAATTCCCA
Thermotoga sp. Cell2, complete genome.
CP003409.1:610578-610597
CTCCGATCTCTTCCCTGTCGAACTTACCAC610578GGAGGTAGGGGAAGAAGAAGACCGCGTTCTTTTGATATTTAAACATCCTG
Dolichovespula saxonica genome assembly, chromosome: 16.
OU427008.1:1360077-1360096
GTATTTAGCGAGCGTAAAGAAAAGGAGGAA1360077GGAGGTAGGGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGGAAAACAAG
Anthophora plumipes genome assembly, chromosome: 1.
OX638111.1:36612490-36612509
AGAAGAAGAAGAGGAAGAGAAAGAAGAAGA36612490GGAGGTAGGGGAAGAAGAAGAGGAAGAAGAGGAGAAAGAAGAGTAGGAAG
Melanotus villosus genome assembly, chromosome: 2.
OY720419.1:44743017-44743036
CGACGCTCGCTGAGGGCATTAGGGCTATTA44743017GGAGGTAGGGGAAGAAGAAGAATTAATGACAGTTCTGGCTAATTCAAGAA
Priocnemis perturbator genome assembly, chromosome: 3.
OZ012645.1:17956113-17956132
ATACGAGCCATATTATTTCTCTCCTGGAAC17956113GGAGGTAGGGGAAGAAGAAGAAAGAAGGAGCCACCGAGTCGAAGGCTCCA
Arvicola amphibius genome assembly, chromosome: 11.
LR862391.2:79607380-79607399
CTTCCATCCTTTTTCTCTTTCTTTCTCTTT79607380CTTCTTCTTCCCCTACCTCCTCCTCTTAGTCTTTCCCACTCATCTCTCCC
Felis catus Senzu DNA, chromosome: A2, American Shorthair breed.
AP023153.1:39887004-39887023
TAAAAGAAACACCATATTTACTGATACTCA39887004CTTCTTCTTCCCCTACCTCCTGACAACCGTTAATCTATGTTCTATCTGTA
Vespertilio murinus genome assembly, chromosome: 3.
OZ004706.1:21150105-21150124
GACCCCAGATCTGGTTCCTTGGCTTCTTCT21150105CTTCTTCTTCCCCTACCTCCCCGGCCCTAAGGTGTTCTGGGAACTGCGTG
Podarcis cretensis genome assembly, chromosome: 5.
OX638153.1:213179-213198
TGCTTTCTGTTTCTTTTTCTTCTTCTTCCG213179CTTCTTCTTCCCCTACCTCCCCTTCTCCTTCCTCCTCCTCTTCCCCCTCC
Zootoca vivipara genome assembly, chromosome: 10.
OY735911.1:64361233-64361252
ATATCAAACCAAAATCGCCCAACACAGAAT64361233CTTCTTCTTCCCCTACCTCCTCCCAAGCGCATGTTTAATTGGGGTTTAAA
CSATR1JP-T3-019_G03_3DEC2008_010 CSATR1JP Cannabis sativa cDNA, mRNA sequence.
JK495425.1:311-330
TCTCTGGTCTCCGCCTCGACGGCCTTCTCT311CTTCTTCTTCCCCTACCTCCGCTTCTTCCGCCTCCGCTGCTTCTCATTTC
CSATR1JP-T3-022_C11_19DEC2008_046 CSATR1JP Cannabis sativa cDNA, mRNA sequence.
JK496331.1:90-109
TCTCTGGTCTCCGCCTCGACGGCCTTCTCT90CTTCTTCTTCCCCTACCTCCGCTTCTTCCGCCTCCGCTGCTTCTCATTTC
CSATR1JP_T3_017_H15_19DEC2008_058 CSATR1JP Cannabis sativa cDNA, mRNA sequence.
JK500930.1:195-214
TCTCTGGTCTCCGCCTCGACGGCCTTCTCT195CTTCTTCTTCCCCTACCTCCGCTTCTTCCGCCTCCGCTGCTTCTCATTTC
TSA: Lingulodinium polyedrum Locus_11952_Transcript_1/1.Lipo mRNA sequence.
JO699765.1:680-699
CTACGAGTCGGACCCGCTGATGGCCATGAT680CTTCTTCTTCCCCTACCTCCTGCTCTTCAACTTGGTCTTCCTGAACATCT
TSA: Cannabis sativa PK04195.1_1.CasaPuKu mRNA sequence.
JP450183.1:263-282
TCTCTGGTCTCCGCCTCGACGGCCTTCTCT263CTTCTTCTTCCCCTACCTCCGCTTCTTCCGCCTCCGCTGCTTCTCATTTC
TSA: Arachis hypogaea Ahy.Unigene33121 mRNA sequence.
JR571634.1:135-154
CCTCCTCCTCCTCCTCTTCTTCTTCTTCTT135CTTCTTCTTCCCCTACCTCCTCACTTGCCTTTCAAGCTCTAGTTGAAGGC
CH261-2M21_RM1.2 CH261 Gallus gallus genomic clone CH261-2M21, genomic survey sequence.
CC304446.1:960-979
TACCTACTGCGCCCCCTCACTCCCCACCCA960CTTCTTCTTCCCCTACCTCCCACCCCTCGCACACAAAATCCACTTCATAC
Arachis hypogaea cultivar Shitouqi chromosome A01.
CP030983.1:109752753-109752772
CCTCCTCCTCCTCCTCCTCTTCTTCTTCTT109752753CTTCTTCTTCCCCTACCTCCTCTGGCTCCTCTTCTTCTTCCTCTACCTCC
Cenchrus purpureus cultivar elephant grass chromosome B1.
CP053461.1:143857420-143857439
TTGGCCCACCAGAGCTCGTCGCAGCCACTT143857420CTTCTTCTTCCCCTACCTCCCGCTCCATCCCGTCCTCGAGCCCGACCAGG
Immersiporthe knoxdaviesiana isolate CMW 37318 chromosome 4.
CP088209.1:3387179-3387198
GGTCTTGATTTTTCTTTTCTTCCTCCTCTT3387179CTTCTTCTTCCCCTACCTCCACTCCTTGTTCGTCACTCCGTCTCCTTCTC
Avena insularis genome assembly, chromosome: 7C.
OU342344.1:21991425-21991444
AGGAAGAGGCCCGCGCCGTCACCGCCCCTC21991425CTTCTTCTTCCCCTACCTCCCAAACCCTAGTTCCTACCCTAACCTCCGGC
Avena sativa genome assembly, chromosome: 7C.
OU342391.1:20955323-20955342
AGGAAGAGGCCCGCGCCGTCACCGCCCCTC20955323CTTCTTCTTCCCCTACCTCCCAAACCCTAGTTCCTACCCTAACCTCCGGC
Avena sativa genome assembly, chromosome: 14.
OV702292.1:28259907-28259926
AGGAAGAGGCCCGCGCCGTCACCGCCCCTC28259907CTTCTTCTTCCCCTACCTCCCAAACCCTAGTTCCTACCCTAACCTCCGGC
Hedera helix genome assembly, chromosome: 23.
OX359286.1:38517543-38517562
ACCATGATTCCTTTAATTTAGATCTTTCTT38517543CTTCTTCTTCCCCTACCTCCCTCCCTTCCCGTCGCCCCCTCCAACCTGTC
Agrostemma githago genome assembly, chromosome: 8.
OY288246.1:33604115-33604134
TATCTAGTTTAGTGAATGTGACCATTTTCT33604115CTTCTTCTTCCCCTACCTCCCCCGATATTCCACTTTATCCTTTCTCCTTC
Hordeum bulbosum genome assembly, chromosome: 2H_1.
OY737428.1:505936021-505936040
CACATTCGGTGTCTTCGGGGCAACACTCCT505936021CTTCTTCTTCCCCTACCTCCTCCGAGATTGCCTTCTCCTTCAAGGTAACG
Hordeum bulbosum genome assembly, chromosome: 2H_1.
OY737519.1:501924877-501924896
CACATTCGGTGTCTTCGGGGCAACACTCCT501924877CTTCTTCTTCCCCTACCTCCTCCGAGATTGCCTTCTCCTTCAAGGTAACG
Erodium maritimum genome assembly, chromosome: 4.
OY997591.1:36605749-36605768
CCTACAACTGCCCCCAAATTCATCTTCCAT36605749CTTCTTCTTCCCCTACCTCCGTTTCCTACACAAATTTTCTCCCAAAAATC
Vespula germanica genome assembly, chromosome: 24.
HG996551.1:1068620-1068639
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTT1068620CTTCTTCTTCCCCTACCTCCAATCTCGCCAGCAATTATCCTCGTTGAAGG
Ancistrocerus nigricornis genome assembly, chromosome: 2.
OU696665.1:26790613-26790632
AACCCTCCTCCTATTCTTCCTATTCTTTTT26790613CTTCTTCTTCCCCTACCTCCTCTTCTTCCTGACGAGAAGCAGCAGCAACG
Rhaphigaster nebulosa genome assembly, chromosome: 1.
OX411306.1:158480922-158480941
CTTTCCAACTAGATTTTTTAGCAATCCTTT158480922CTTCTTCTTCCCCTACCTCCTTTGTGCCGTGAAGCATGGAGCTGCAGTCT
Pelosia muscerda genome assembly, chromosome: 16.
OY829114.1:9401493-9401512
ATAGCACAGAGATTCTCTTAAACTTCTTCC9401493CTTCTTCTTCCCCTACCTCCCCTCCCGTCTATATGGTCAACAGCACGATT
Sepia lycidas genome assembly, chromosome: 38.
OZ010608.1:73385729-73385748
CTTCATTTTTTTACTTCTACTTCTATTTTT73385729CTTCTTCTTCCCCTACCTCCTCTACTTCTACTACAATTCCTTCTTCTACA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GGAGGTAGGGGAAGAAGAAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GGAGGTAGGGGAAGAAGAAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.362 | 0.353 | search_plus_done; http://172.18.8.135:50400/match?q=GGAGGTAGGGGAAGAAGAAG&k=0&no_gap=0&offset=0&limit=50
1.078 | 0.716 | search_minus_done; http://172.18.8.135:50400/match?q=CTTCTTCTTCCCCTACCTCC&k=0&no_gap=0&offset=0&limit=31
1.097 | 0.019 | cgi_end;

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