GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 13:10:59, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Homo sapiens chromosome 18, clone RP11-111H3, complete sequence.
AC034110.13:48546-48564
ACGAGAGCAGAGTGAATCAGCAGGGCTGGG48546GGAGGTGGCTTTGTAGTATCAACGGTTGGGGGGTGGCCCCTAGTTCCTA
Homo sapiens DNA, chromosome 18, nearly complete genome.
AP023478.1:74118757-74118775
ACGAGAGCAGAGTGAATCAGCAGGGCTGGG74118757GGAGGTGGCTTTGTAGTATCAAGGGTTGGGGGGTGGCCCCTAGTTCCTA
Homo sapiens isolate CHM13 chromosome 18.
CP068260.2:76801867-76801885
ACGAGAGCAGAGTGAATCAGCAGGGCTGGG76801867GGAGGTGGCTTTGTAGTATCAAGGGTTGGGGGGTGGCCCCTAGTTCCTA
Homo sapiens isolate NA24385 chromosome 18.
CP139525.1:75426373-75426391
ACGAGAGCAGAGTGAATCAGCAGGGCTGGG75426373GGAGGTGGCTTTGTAGTATCAAGGGTTGGGGGGTGGCCCCTAGTTCCTA
Homo sapiens isolate NA24385 chromosome 18.
CP139548.1:77060683-77060701
ACGAGAGCAGAGTGAATCAGCAGGGCTGGG77060683GGAGGTGGCTTTGTAGTATCAAGGGTTGGGGGGTGGCCCCTAGTTCCTA
N.leucogenys DNA sequence from clone CH271-298N13.
CT990555.8:177955-177973
ACGGGAGCAGAGTGAATCAGCAGGGCTGGG177955GGAGGTGGCTTTGTAGTATCAAGGGTGGGGGCCGGGCGCGGTGGCTCAC
Eukaryotic synthetic construct chromosome 18.
CP034496.1:74275058-74275076
ACGAGAGCAGAGTGAATCAGCAGGGCTGGG74275058GGAGGTGGCTTTGTAGTATCAACGGTTGGGGGGTGGCCCCTAGTTCCTA
Eukaryotic synthetic construct chromosome 18.
CP034521.1:74275058-74275076
ACGAGAGCAGAGTGAATCAGCAGGGCTGGG74275058GGAGGTGGCTTTGTAGTATCAACGGTTGGGGGGTGGCCCCTAGTTCCTA
Homo sapiens chromosome 18 clone RP11-234N1 map 18, WORKING DRAFT SEQUENCE, 17 unordered pieces.
AC024396.2:153690-153708
ACGAGAGCAGAGTGAATCAGCAGGGCTGGG153690GGAGGTGGCTTTGTAGTATCAACGGTTGGGGGGTGGCCCCTAGTTCCTA
Homo sapiens chromosome 18 clone RP11-871B24 map 18, 6 ordered pieces.
AC138762.4:66158-66176
ACGAGAGCAGAGTGAATCAGCAGGGCTGGG66158GGAGGTGGCTTTGTAGTATCAAGGGTTGGGGGGTGGCCCCTAGTTCCTA
Echeneis naucrates genome assembly, chromosome: 1.
LR584042.1:9113132-9113150
TGCAAGTTTGCAGAGGCACGCTACCTTAAA9113132ATACTACAAAGCCACCTCCAAATTTTTATGCACATATTAAAAAGCAAAC
Phoenix dactylifera microsatellite DNA, clone CIR070.
AJ571684.1:202-220
TTTTTTAGCAAAAAAATATAAAAGCTTCAC202ATACTACAAAGCCACCTCCCATTTCCCCAAGCCATGAAATAAGCCTTCC
Xestospongia muta genome assembly, chromosome: 11.
OY848927.1:1593022-1593040
CTGCTAAGAAACTCACGACAACCACCGCTA1593022ATACTACAAAGCCACCTCCTCTAGAAGAGCCTGGCATTCAGGAAGTAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGAGGTGGCTTTGTAGTAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGAGGTGGCTTTGTAGTAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.108 | 0.099 | search_plus_done; http://172.18.8.135:50400/match?q=GGAGGTGGCTTTGTAGTAT&k=0&no_gap=0&offset=0&limit=50
0.145 | 0.038 | search_minus_done; http://172.18.8.135:50400/match?q=ATACTACAAAGCCACCTCC&k=0&no_gap=0&offset=0&limit=40
0.147 | 0.002 | cgi_end;

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