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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-09 06:12:22, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

BN25.066K21F020122 BN25 Brassica napus cDNA clone BN25066K21, mRNA sequence.
CD827204.1:594-613
TGGTAAGTGGTAAGGACAATGTCATTGACA594GGAGTATCCAAGACGCTTACATTCACGCCATAAGACGTGCCAAAGACTTC
Brassica oleracea var. viridis mRNA, clone: KALE-108A17, 5' end sequence.
DK496874.1:554-573
TGGTAAGTGGTAAGGACAATGTCATTGACA554GGAGTATCCAAGACGCTTACATTCACGCCATAAGACGTGCTAAAGACTTC
57ACPE6_UP_012_E11_10SEP2004_087 Brassica napus DH12075 Brassica napus cDNA 5', mRNA sequence.
EE415436.1:133-152
TGGTAAGTGGTAAGGACAATGTCATTGACA133GGAGTATCCAAGACGCTTACATTCACGCCATAAGACGTGCCAAAGACTTC
76ETGS72_UP_010_G02_12MAY2005_004 76ETGS72 Brassica napus cDNA 5', mRNA sequence.
EE450198.1:71-90
TGGTAAGTGGTAAGGACAATGTCATTGACA71GGAGTATCCAAGACGCTTACATTCACGCCATAAGACGTGCCAAAGACTTC
EBENXNS02GKE0U 8-day Arabidopsis seedlings, aerial tissues Arabidopsis thaliana cDNA, mRNA sequence.
EL062547.1:3-22
TA3GGAGTATCCAAGACGCTTACATTCATGCAATCAGACGTGCTAAGGATTTC
36RDBRG_UP_076_C11_19JAN2006_091 Brassica rapa 36RDBRG Brassica rapa cDNA 5', mRNA sequence.
ES929135.1:330-349
TCGTAAGTGGGAAGGACAATGTCATTGACA330GGAGTATCCAAGACGCTTACATTCACGCCATAAGACGTGCCAAAGACTTC
46RDOAG_UP_077_E09_02FEB2006_071 Brassica oleracea 46RDOAG Brassica oleracea cDNA 5', mRNA sequence.
ES939544.1:122-141
TGGTAAGTGGTAAGGACAATGTCATTGACA122GGAGTATCCAAGACGCTTACATTCACGCCATAAGACGTGCCAAAGACTTC
DHBN6DCT_UP_012_H04_15FEB2005_018 Brassica napus DHBN6DCT Brassica napus cDNA 5', mRNA sequence.
EV011768.1:125-144
TGGTAAGTGGTAAGGACAATGTCATTGACA125GGAGTATCCAAGACGCTTACATTCACGCC
BNSCS2CT_UP_052_G01_18APR2007_003 Brassica napus BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EV019644.1:177-196
TGGTAAGTGGTAAGGACAATGTCATTGACA177GGAGTATCCAAGACGCTTACATTCACGCTATAAGACGTGCTAAAGACTTC
0155097 Brassica napus Etiolated seedlings (pSPORT1) Brassica napus cDNA, mRNA sequence.
EV182156.1:114-133
TGGTAAGTGGTAAGGACAATGTCATTGACA114GGAGTATCCAAGACGCTTACATTCACGCCATAAGACGTGCCAAAGACTTC
0088743 Brassica napus Cold acclimation - dark Brassica napus cDNA, mRNA sequence.
EV191262.1:165-184
TCGTAAGTGGGAAGGACAATGTCATTGACA165GGAGTATCCAAGACGCTTACATTCACGCCATAAGACGTGCCAAAGACTTC
0100874 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV199721.1:169-188
TCGTAAGTGGGAAGGACAATGTCATTGACA169GGAGTATCCAAGACGCTTACATTCACGCCATAAGACGTGCCAAAGACTTC
0103527 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV202374.1:694-713
TCGTAAGTGGGAAGGACAATGTCATTGACA694GGAGTATCCAAGACGCTTACATTCACGCCATAAGACGTGCCAAAGACTTC
0175301 Brassica napus Leaf - drought Brassica napus cDNA, mRNA sequence.
EV206594.1:184-203
TCGTAAGTGGGAAGGACAATGTCATTGACA184GGAGTATCCAAGACGCTTACATTCACGCCATAAGACGTGCCAAAGACTTC
0179681 Brassica napus Leaf - drought Brassica napus cDNA, mRNA sequence.
EV209472.1:677-696
TGGTAAGTGGTAAGGACAATGTCATTGACA677GGAGTATCCAAGACGCTTACATTCACGCCATAAGACGTGCCAAAGACTTC
0136725 Brassica napus Root - drought Brassica napus cDNA, mRNA sequence.
EV221617.1:254-273
TCGTAAGTGGGAAGGACAATGTCATTGACA254GGAGTATCCAAGACGCTTACATTCACGCCATAAGACGTGCCAAAGACTTC
BR066260 silique cDNA library KBSP Brassica rapa subsp. pekinensis cDNA clone KBSP-065C05 5', mRNA sequence.
EX081616.1:569-588
TGGTAAGTGGTAAGGACAATGTCATTGACA569GGAGTATCCAAGACGCTTACATTCACGCTATAAGACGTGCTAAGACTTCA
BR121498 root cDNA library KHRT Brassica rapa subsp. pekinensis cDNA clone KHRT-87F04 5', mRNA sequence.
EX137668.1:699-718
TGGTAAGTGGTAAGGACAATGTCATTGACA699GGAGTATCCAAGACGCTTACATTCACGCTATAAGACGTGCTAAAGACTTC
BR122143 root cDNA library KHRT Brassica rapa subsp. pekinensis cDNA clone KHRT-95F05 5', mRNA sequence.
EX138313.1:284-303
TGGTAAGTGGTAAGGACAATGTCATTGACA284GGAGTATCCAAGACGCTTACATTCACGCTATAAGACGTGCTAAAGACTTC
BN18DYSC_UP_139_D03_3APR2008_025 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG564691.1:419-438
TGGTAAGTGGTAAGGACAATGTCATTGACA419GGAGTATCCAAGACGCTTACATTCACGCTATAAGACGTGCTAAAGACTTC
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_3419.
FX693115.1:1390-1409
TGGTAAGTGGTAAGGACAATGTCATTGACA1390GGAGTATCCAAGACGCTTACATTCACGCTATAAGACGTGCTAAAGACTTC
Brassica oleracea phospholipase D2 (PLD2) mRNA, complete cds.
AF090444.1:1561-1580
TGGTAAGTGGTAAGGACAATGTCATTGACA1561GGAGTATCCAAGACGCTTACATTCACGCCATAAGACGTGCTAAAGACTTC
Brassica oleracea var. capitata phospholipase D2 (PLD2) gene, complete cds.
AF113919.1:2053-2072
TGGTAAGTGGTAAGGACAATGTCATTGACA2053GGAGTATCCAAGACGCTTACATTCACGCCATAAGACGTGCTAAAGACTTC
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:8444178-8444197
TGGTAAGTGGTAAGGACAATGTCATTGACA8444178GGAGTATCCAAGACGCTTACATTCACGCCATAAGACGTGCCAAAGACTTC
Brassica napus phospholipase D2 (PLD2) mRNA, complete cds.
KC292494.1:1505-1524
TCGTAAGTGGGAAGGACAATGTCATTGACA1505GGAGTATCCAAGACGCTTACATTCACGCCATAAGACGTGCCAAAGACTTC
Brassica napus phospholipase D4 (PLD4) mRNA, complete cds.
KF113587.1:1505-1524
TGGTAAGTGGTAAGGACAATGTCATTGACA1505GGAGTATCCAAGACGCTTACATTCACGCTATAAGACGTGCTAAAGACTTC
Brassica rapa phospholipase D2 (PLD) gene, partial cds; chloroplast.
KJ747107.1:184-203
TGGTAAGTGGTAAGGACAATGTCATTGACA184GGAGTATCCAAGACGCTTACATTCACGCCATAAGACGTGCTAAAGACTTC
Brassica oleracea var. capitata phospholipase D mRNA, complete cds.
U85482.1:1610-1629
TGGTAAGTGGTAAGGACAATGTCATTGACA1610GGAGTATCCAAGACGCTTACATTCACGCCATAAGACGTGCTAAAGACTTC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_2030.
FX727786.1:306-325
GAAGTCTTTAGCACGTCTTATAGCGTGAAT306GTAAGCGTCTTGGATACTCCTGTCAATGACATTGTCCTTACCACTTACCA
BOHBB66TR BOHB Brassica oleracea genomic clone BOHBB66, genomic survey sequence.
BH436925.1:646-665
GAAGTCTTTAGCACGTCTTATGGCGTGAAT646GTAAGCGTCTTGGATACTCCTGTCAATGACATTGTCCTTACCACTTTACA
Brassica napus GSS, clone JBnB155J19, end read, primer SACR2(reverse).
FP064736.1:125-144
GAAGTCTTTAGCACGTCTTATAGCGTGAAT125GTAAGCGTCTTGGATACTCCTGTCAATGACATTGTCCTTACCACTTACCA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB089M05, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189514.2:80215-80234
GAAGTCTTTAGCACGTCTTATAGCGTGAAT80215GTAAGCGTCTTGGATACTCCTGTCAATGACATTGTCCTTACCACTTACCA
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:39874260-39874279
GAAGTCTTTAGCACGTCTTATGGCGTGAAT39874260GTAAGCGTCTTGGATACTCCTGTCAATGACATTGTCCTTACCACTTACCA
Brassica napus genome assembly, chromosome: A01.
HG994355.1:26764941-26764960
GAAGTCTTTAGCACGTCTTATAGCGTGAAT26764941GTAAGCGTCTTGGATACTCCTGTCAATGACATTGTCCTTACCACTTACCA
Brassica napus genome assembly, chromosome: C01.
HG994365.1:44932679-44932698
GAAGTCTTTGGCACGTCTTATGGCGTGAAT44932679GTAAGCGTCTTGGATACTCCTGTCAATGACATTGTCCTTACCACTTACCA
Brassica rapa genome, scaffold: A01.
LR031571.1:31706732-31706751
GAAGTCTTTGGCACGTCTTATGGCGTGAAT31706732GTAAGCGTCTTGGATACTCCTGTCAATGACATTGTCCTTCCCACTTACGA
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:43939971-43939990
GAAGTCTTTAGCACGTCTTATGGCGTGAAT43939971GTAAGCGTCTTGGATACTCCTGTCAATGACATTGTCCTTACCACTTACCA
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:32239061-32239080
GAAGTCTTTGGCACGTCTTATGGCGTGAAT32239061GTAAGCGTCTTGGATACTCCTGTCAATGACATTGTCCTTCCCACTTACGA

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