GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 09:49:52, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

AT_SBa0001M08.f AT__SBa Amborella trichopoda genomic clone AT_SBa0001M08 5', genomic survey sequence.
HR617539.1:541-560
AAAAGCGGTGCTGTGGAGCCCATGTAGGAG541GGAGTGTGCATCTTCCCAGTTTCAATTTCAAGGAGTTCTGCGCTTAGAGA
AT_SBa0052C01.f AT__SBa Amborella trichopoda genomic clone AT_SBa0052C01 5', genomic survey sequence.
HR653444.1:543-562
AAAAGCGGTGCTGTGGAGCCCATGTAGGAG543GGAGTGTGCATCTTCCCAGTTTCAATTTCAAGGAGTTCTGCGCTTAGAGA
Octopus vulgaris genome assembly, chromosome: 5.
OX597818.1:28638514-28638533
TGCAGCATTGTATGTTCTTTTCTGCTGTTG28638514GGAGTGTGCATCTTCCCAGTACTGTACTGTATTAACTTTTTTTCCCTTGA
Octopus vulgaris genome assembly, chromosome: 5.
OX597818.1:28815006-28815025
TGCAGCATTGTATGTTCTTTTCTGCTGTTG28815006GGAGTGTGCATCTTCCCAGTACTGTACTGTATTAACTTTTTTTCCCTTGA
Octopus vulgaris genome assembly, chromosome: 28.
OX597841.1:8020456-8020475
TGCAGCATTGTATGTTCTTTTCTGCTGTTG8020456GGAGTGTGCATCTTCCCAGTACTCTACTGTATTACCTTTTTTTCCCTTGA
Atr02b_72_H01_C011.g1 FGP Female Amborella trichopoda Amborella trichopoda cDNA clone 122Dhq_P02 5', mRNA sequence.
FD438566.1:347-366
TCTCTAAGAGCAGAACTCCTTGAAATTGAA347ACTGGGAAGATGCACACTCCCTCCTACATGGGCTCCACAGCACCGCTTTT
Octopus vulgaris genome assembly, chromosome: 28.
OX597841.1:10720405-10720424
TCAAGGGAAAAAAAGGTAATACAGTAGAGT10720405ACTGGGAAGATGCACACTCCCAACAGCAGAAAAGAACATACAATGCTGCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGAGTGTGCATCTTCCCAGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGAGTGTGCATCTTCCCAGT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.224 | 0.216 | search_plus_done; http://172.18.8.135:50400/match?q=GGAGTGTGCATCTTCCCAGT&k=0&no_gap=0&offset=0&limit=50
0.312 | 0.088 | search_minus_done; http://172.18.8.135:50400/match?q=ACTGGGAAGATGCACACTCC&k=0&no_gap=0&offset=0&limit=45
0.313 | 0.001 | cgi_end;

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