GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:27:04, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Micromys minutus genome assembly, chromosome: 1.
OZ004780.1:209849012-209849031
ATAGAAGCAGGGGAAGGGAGGATGTGATAG209849012GGAGTTTCTGGAGAAGCAACCATGAAAGGGAACAACATTTGAAATGTAAA
Lipophrys pholis genome assembly, chromosome: 11.
OY726543.1:29068217-29068236
GTCGGTGGAGTACGAGAGGAACAAGTTCCA29068217GGAGTTTCTGGAGAAGCAACCCAGTGAGTTTTCTTCTTCCGTTTCAGCTG
Blennius ocellaris genome assembly, chromosome: 11.
OY730211.1:9102945-9102964
AATATCAACAGTTAACAGTTCGGTGCGTGA9102945GGAGTTTCTGGAGAAGCAACGGGAAAGAGCTGAATGTGAAACCTACAGAA
JLE00000110 Jakoba libera Company (STANDARD) Jakoba libera cDNA, mRNA sequence.
EC692845.1:561-580
CCTCATCAACAAAGGCGTCCTTGAGGTCAA561GGAGTTTCTGGAGAAGCAACGGGATCCAAAGAAGCCGGCACGTCAGGACC
Brassica oleracea isolate B265 ABI1 protein (ABI1) gene, partial cds; RPS2 protein (RPS2) and N-myristoyl transferase (N-MYR) genes, complete cds; and CK1a protein (CK1a) gene, partial cds.
AF180355.1:5921-5940
CAACATTGGTGCGGAATGCAAGCTGAGAGT5921GGAGTTTCTGGAGAAGCAACACGCGTGGGAGTTCTTCTGTGGTAAAGTTG
Brassica oleracea isolate B117 RPS2 gene, partial sequence.
AF180357.1:861-880
CAACATTGGTGCGGAATGCAAGCTGAGAGT861GGAGTTTCTGGAGAAGCAACACGCGTGGGAGCTCTTCTGTGGTAAAGTTG
Brassica montana RPS2 gene, partial sequence.
AF180358.1:861-880
CAACATTGGTGCGGAATGCAAGCTGAGAGT861GGAGTTTCTGGAGAAGCAACACGCGTGGGAGCTCTTCTGTGGTAAAGTTG
Brassica napus cultivar Drakkar RPS2-1 pseudogene, partial sequence.
AF181727.1:832-851
CAACATTGGTGCGGAATGCAAGCTGAGAGT832GGAGTTTCTGGAGAAGCAACACGCGTGGGAGCTCTTCTGTGGTAAAGTTG
Brassica oleracea cultivar Rapid Cycling resistance protein RPS2 homolog (RPS2) gene, partial cds.
AF181729.1:707-726
CAACATTGGTGCGGAATGCAAGCTGAGAGT707GGAGTTTCTGGAGAAGCAACACGCGTGGGAGCTCTTCTGTGGTAAAGTTG
Brassica napus genome assembly, chromosome: C01.
HG994365.1:14320779-14320798
CAACATTGGTGCGGAATGCAAGCTGAGAGT14320779GGAGTTTCTGGAGAAGCAACACGCGTGGGAGCTCTTCTGTGGTAAAGTTG
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:14284235-14284254
CAACATTGGTGCGGAATGCAAGCTGAGAGT14284235GGAGTTTCTGGAGAAGCAACACGCGTGGGAGCTCTTCTGTGGTAAAGTTG
Nibea albiflora genome assembly, chromosome: 10.
LR699033.1:2208097-2208116
GCAGAACATGGAGGAGTGACTCCTTACTGG2208097GTTGCTTCTCCAGAAACTCCTGGAACTTGCTCCTCTCGTACTCGACCGAC
Argyrosomus regius genome assembly, chromosome: 5.
OX336886.1:1978206-1978225
ACATAACATGGAGGAGTGACTCCTTACTGG1978206GTTGCTTCTCCAGAAACTCCTGGAACTTGCTCCTCTCATACTCGACCGAC
BOT01-96B13TR BOT01 Brassica oleracea genomic clone BOT01-96B13, genomic survey sequence.
FI745556.1:451-470
CAACTTTACCACAGAAGAGCTCCCACGCGT451GTTGCTTCTCCAGAAACTCCACTCTCAGCTTGCATTCCGCACCAATGTTG
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:42309130-42309149
CAACTTTACCACAGAAGAGCTCCCACGCGT42309130GTTGCTTCTCCAGAAACTCCACTCTCAGCTTGCATTCCGCACCAATGTTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGAGTTTCTGGAGAAGCAAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGAGTTTCTGGAGAAGCAAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.400 | 0.391 | search_plus_done; http://172.18.8.135:50400/match?q=GGAGTTTCTGGAGAAGCAAC&k=0&no_gap=0&offset=0&limit=50
0.537 | 0.137 | search_minus_done; http://172.18.8.135:50400/match?q=GTTGCTTCTCCAGAAACTCC&k=0&no_gap=0&offset=0&limit=39
0.540 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).