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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 19:06:30, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:17157437-17157456
CCCATCATAGGATTGCTTTTGCTTAACTTC17157437GGAGTTTTGATGGAACTTGAAGCCAGTGAGCTTCAAAAAGGCCTCATGCT
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141936.1:17280377-17280396
GATTACTCTCGCGCAAACTTGCTTAACTTT17280377GGAGTTTTGATGGAACTTGAAGCCAATGAGCTTCGAAAAGGCCTCATGCT
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141962.1:16658565-16658584
CCCATCATAGGATTGCTTTTGCTTAACTTC16658565GGAGTTTTGATGGAACTTGAAGCCAGTGAGCTTCGAAAAGGCCTCATGCT
Malus hybrid cultivar cultivar Royalty chromosome 3.
CP141972.1:11046540-11046559
TGCTCTCGCGCCGCGAACTTACTTAACTTT11046540GGAGTTTTGATGGAACTTGAAGCCAGTAAGCTCCCAAAAGGCCTCGTGCT
Malus hybrid cultivar cultivar Royalty chromosome 6.
CP141975.1:4770740-4770759
AATTACTCTCGCACGAACTTGCTTAATTTC4770740GGAGTTTTGATGGAACTTGAAGCCAGCGAGCTCCCAAAAGGCCTTGTGCT
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141979.1:17166599-17166618
CCCATCATAGGATTGCTTTTGCTTAACTTC17166599GGAGTTTTGATGGAACTTGAAGCCAGTGAGCTTCGAAAAGGCCTCATGCT
Malus hybrid cultivar cultivar Royalty chromosome 13.
CP141982.1:3971119-3971138
GATTGCTCTCACGCGAACTCGCTTAACTCC3971119GGAGTTTTGATGGAACTTGAAGCCAGTGAGCTCCTAAAAGGCCTCGTGCT
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143367.1:17633801-17633820
GATTGCTCTCGCGCAAACTCGCTTAACTTC17633801GGAGTTTTGATGGAACTTGAAGCCAATGAGAAAAATAAGGGAGTCAGGGA
Secale cereale genome assembly, chromosome: 4R.
LR738712.1:901944879-901944898
ATCATCTCGCCAGCCTCCACACAAACATTC901944879GGAGTTTTGATGGAACTTGAAGATGCCAGATATTGCTCCACTTGTCCGCC
Secale cereale genome assembly, chromosome: 7R.
LR738715.1:54502064-54502083
ATCGTTTCGCCAGCCTCCACACAAACATTC54502064GGAGTTTTGATGGAACTTGAATATGCCAAATATTGCTCCACTTGTCCGCC
Secale cereale genome assembly, chromosome: 0R.
LR738716.1:29008456-29008475
ATCGTTTCGCCAGCCTCCACACAAACATTC29008456GGAGTTTTGATGGAACTTGAATATGCCAAATATTGCTCCACTTGTCCGCC
Malus sylvestris genome assembly, chromosome: 10.
OU696512.1:17097765-17097784
GATTACTCTCGTGCAAACTTGCTTAACTTC17097765GGAGTTTTGATGGAACTTGAAGCCAGTGAGCTTCGAAAAGGCCTCATGCT
Malus sylvestris genome assembly, chromosome: 14.
OU696516.1:10555496-10555515
GATTGCTCTCACGTGAACTCGCTTAACTTC10555496GGAGTTTTGATGGAACTTGAAGCCAATGAGTTCCCAAAATGCCTCATGCT
Malus domestica genome assembly, chromosome: 10.
OU696686.1:17230621-17230640
GATTGCTCTCGCGCAAACTCGCTTAACTTC17230621GGAGTTTTGATGGAACTTGAAGCCAATGAGAAAAATAAGGGAGTCAGGGA
Malus domestica genome assembly, chromosome: 14.
OU696690.1:10923072-10923091
GATTGCTCTCACGTGAACTCGCTTAACTTC10923072GGAGTTTTGATGGAACTTGAAGCCAATGAGTTCCCAAAATGCCTCATGCT
Malus domestica genome assembly, chromosome: 10.
OU744551.1:17244402-17244421
GATTGCTCTCGCGCAAACTCGCTTAACTTC17244402GGAGTTTTGATGGAACTTGAAGCCAATGAGAAAAATAAGGGAGTCAGGGA
Malus domestica genome assembly, chromosome: 14.
OU744555.1:11019283-11019302
GATTGCTCTCACGTGAACTCGCTTAACTTC11019283GGAGTTTTGATGGAACTTGAAGCCAATGAGTTCCCAAAATGCCTCATGCT
Malus domestica genome assembly, chromosome: 10.
OU744962.1:17789676-17789695
GATTACTCTCGCGTAAACTTGCTTAACTTC17789676GGAGTTTTGATGGAACTTGAAGCCAGTGAGCTTCGAAAAGGCCTCATGCT
Malus domestica genome assembly, chromosome: 5.
OU744995.1:39329473-39329492
GATTGCTCTCGCGTGAACTTACTTAACTTC39329473GGAGTTTTGATGGAACTTGAAGTCAGTAAGCTCCCAAAAGGCCTCGTGCT
Malus domestica genome assembly, chromosome: 10.
OU745000.1:16909807-16909826
GATTACTCTCGTGCAAACTTGCTTAACTTC16909807GGAGTTTTGATGGAACTTGAAGCCAGTGAGCTTCGAAAAGGCCTCATGCT
Malus x robusta genome assembly, chromosome: 4.
OY720328.1:16691151-16691170
CCCATCATAGGATTGCTTTTGCTTAACTTC16691151GGAGTTTTGATGGAACTTGAAGCCAGTGAGCTTCGAAAAGGCCTCATGCT
Malus hybrid cultivar cultivar Flame chromosome 4.
CP141913.1:20191065-20191084
AGCACGAGACCTTTTGGGAGCTCACTGGCT20191065TCAAGTTCCATCAAAACTCCGAAGTTAAGCGAGTTCGCGTGAGAGCAATC
Malus hybrid cultivar cultivar Flame chromosome 13.
CP141922.1:37193797-37193816
AGCACGAGGCCTTTTAGGAGCTCACTGGCT37193797TCAAGTTCCATCAAAACTCCGGAGTTAAGCGAGTTCGCGTGAGAGCAATC
Malus hybrid cultivar cultivar Flame chromosome 3.
CP141929.1:27868715-27868734
AGCACGAGGCCTTTTGGGAGCTTACTGGCT27868715TCAAGTTCCATCAAAACTCCAAAGTTAAGTAAGTTCGCGGCGCGAGAGCA
Malus hybrid cultivar cultivar Royalty chromosome 13.
CP141965.1:2062191-2062210
AGCACGAGGCCTTTTAGGAGCTCACTGGCT2062191TCAAGTTCCATCAAAACTCCGGAGTTAAGCGAGTTCGCGTGAGAGCAATC
Malus hybrid cultivar cultivar SH6 chromosome 3.
CP143360.1:26985951-26985970
AGCACGAGGCCTTTTGGGAGCTTACTGGCT26985951TCAAGTTCCATCAAAACTCCAAAGTTAAGTAAGTTCGCGGCGCGAGAGCA
Secale cereale genome assembly, chromosome: 3R.
LR738711.1:130413126-130413145
GGCGGCCAAGTGGACCAATATCTGGCATCT130413126TCAAGTTCCATCAAAACTCCGAATGTTTGTGTGGAGGCTGGCGAGACGAT
Secale cereale genome assembly, chromosome: 4R.
LR738712.1:47755290-47755309
GGCGGACAAGTGGACCAATATCTGGCATCT47755290TCAAGTTCCATCAAAACTCCGAATGTTTGTGTGGAGGTTGGCGAGACGAT
Secale cereale genome assembly, chromosome: 4R.
LR738712.1:702951571-702951590
GGCGGCCAAGTGGACCAATATCTGGCATCT702951571TCAAGTTCCATCAAAACTCCGAATGTTTGTGTGGAGGCTGGCGAGACGAT
Secale cereale genome assembly, chromosome: 4R.
LR738712.1:845529502-845529521
GGCGGCCAAGTGGACCAATATCTGGCATCT845529502TCAAGTTCCATCAAAACTCCGAATGTTTGTGTGGAGGCTGGCGAGACGAT
Secale cereale genome assembly, chromosome: 6R.
LR738714.1:851839535-851839554
GGCGGACAAGTGGACCAATATCTGGCATCT851839535TCAAGTTCCATCAAAACTCCGAATGTTTGTGTGGAGGCTGGCGAGACGAT
Secale cereale genome assembly, chromosome: 7R.
LR738715.1:493197269-493197288
GGCGGACAAGTGGAGCAATATCTGGCATCT493197269TCAAGTTCCATCAAAACTCCGAATGTTTGTGTGGAGGCTGGCGAGACGAT
Malus domestica genome assembly, chromosome: 9.
OU696685.1:31454239-31454258
AGCACAAGGCCTTTTGGGAGCTCGCTGGCT31454239TCAAGTTCCATCAAAACTCCGAAATTAAGCAAGTTCGTGCGAGAGTAATT
Malus domestica genome assembly, chromosome: 3.
OU744544.1:27887206-27887225
AGCACGAGGCCTTTTGGGAGCTTACTGGCT27887206TCAAGTTCCATCAAAACTCCAAAGTTAAGTAAGTTCGCGGCGCGAGAGCA
Malus domestica genome assembly, chromosome: 3.
OU744955.1:26747925-26747944
AGCACGAGGCCTTTTGGGAGCTTACTGGCT26747925TCAAGTTCCATCAAAACTCCAAAGTTAAGTAAGTTCGCGGCGCGAGAGCA
Malus domestica genome assembly, chromosome: 3.
OU744993.1:27905878-27905897
AGCACGAGGCCTTTTGGGAGCTTACTGGCT27905878TCAAGTTCCATCAAAACTCCAAAGTTAAGTAAGTTCGCGGCGCGAGAGCA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OX460006.1:116742740-116742759
CTGGTTGAAGTGATGGTTCACATAACCTCA116742740TCAAGTTCCATCAAAACTCCCACTCAATTCTTTCGAGAGAAACTTTTCCT
Malus x robusta genome assembly, chromosome: 8.
OY720332.1:30955431-30955450
AGCAGAAGGCCTTTTGGGAGCTCGCTGGCT30955431TCAAGTTCCATCAAAACTCCGAAATTAAGCAAGTTCGTGCGAGAGTAATT
Pyrus communis genome assembly, chromosome: 4.
OY757071.1:15351206-15351225
AGCACGAGGTCTTTTGGGAACTCACTGGCT15351206TCAAGTTCCATCAAAACTCCGAAGTTAAGCGAGTTCGGGCAAGAGCAATC
Marthasterias glacialis genome assembly, chromosome: 13.
OU452231.1:19616387-19616406
TGTTCAGTGTCAACCATGTATCAGGCACCA19616387TCAAGTTCCATCAAAACTCCCCTTACGACGTCACTAAGATTCAAGTAGAT
Stomorhina lunata genome assembly, chromosome: 5.
OW121744.1:69704855-69704874
TGCATTATTATCATAAATATTGATAAACAG69704855TCAAGTTCCATCAAAACTCCTGACTTTACTTTGCTATTGTGTGTTAAAGA
Plagodis dolabraria genome assembly, chromosome: 13.
OY978453.1:23993192-23993211
TGCTAATCTAGTACACAAACTATCTATATT23993192TCAAGTTCCATCAAAACTCCGTTCAGCTCTTTCAGCGTTAAGAACAGCTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GGAGTTTTGATGGAACTTGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GGAGTTTTGATGGAACTTGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.254 | 0.245 | search_plus_done; http://172.18.8.135:50400/match?q=GGAGTTTTGATGGAACTTGA&k=0&no_gap=0&offset=0&limit=50
0.408 | 0.154 | search_minus_done; http://172.18.8.135:50400/match?q=TCAAGTTCCATCAAAACTCC&k=0&no_gap=0&offset=0&limit=29
0.422 | 0.014 | cgi_end;

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