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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 14:50:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Vitis vinifera 5-prime EST SS0ACG23YK16FM1.
FQ455659.1:742-763
GATGGCTTTAGATCAAGTATTGTCAGATCG742GGATAGTGAGGATGAGGTTGATGATGACATTGCAGATTTTGAAGATCGAAGG
Vitis vinifera 5-prime EST SS0ACG55YI18FM1.
FQ460762.1:742-763
GATGGCTTTAGATCAAGTATTGTCAGATCG742GGATAGTGAGGATGAGGTTGATGATGACATTGCAGATTTTGAAGATCGAAAG
TSA: Reaumuria trigyna Unigene66832_T43 mRNA sequence.
JR260266.1:8-29
CCGATAG8GGATAGTGAGGATGAGGTTGATGATGAAATATCAGATCTTGAAGATCGGAGG
Prunus dulcis DNA, pseudomolecule Pd04.
AP019300.1:8882472-8882493
AATGACATTGGAACAAGTTTTGTCAGATCA8882472GGATAGTGAGGATGAGGTTGATGATGATGTTGCTGATTTTGAGGATCGAAGG
Vitis vinifera cv. PN40024, annotated scaffold_234.assembly12x.
FN595528.1:75386-75407
GATGGCTTTAGATCAAGTATTGTCAGATCG75386GGATAGTGAGGATGAGGTTGATGATGACATTGCAGATTTTGAAGATCGAAGG
Prunus dulcis cultivar Desmayo Largueta EMBRYONIC FLOWER 2 (EMF2) mRNA, complete cds.
MN309827.1:1599-1620
AATGACATTGGAACAAGTTTTGTCAGATCA1599GGATAGTGAGGATGAGGTTGATGATGATGTTGCTGATTTTGAGGATCGAAGG
Malus x robusta genome assembly, chromosome: 5.
OY720329.1:3807968-3807989
GATGATATTGGAACAAGTTTTGTCAGATCA3807968GGATAGTGAGGATGAGGTTGATGATGATGTTGCTGATCTTGAAGATCGAAGG
Malus x robusta genome assembly, chromosome: 5.
OY720329.1:3855944-3855965
GATGATGTTGGAACAAGTTTTGTCAGATCA3855944GGATAGTGAGGATGAGGTTGATGATGATGTTGCTGATCTTGAAGATCGAAGG
Crataegus laevigata genome assembly, chromosome: 6.
OY756943.1:4198841-4198862
AATGATGTTGGAACAAGTTTTGTCAGATCA4198841GGATAGTGAGGATGAGGTTGATGATGACGTTGCTGATCTTGAAGATCGAAGG
Pyrus communis genome assembly, chromosome: 8.
OY757075.1:2791570-2791591
AATGATGTTGGAACAAGTTTTGTCAGATCA2791570GGATAGTGAGGATGAGGTTGATGATGATGTTGCTGATCTTGAAGATCGAAGG
Dryas octopetala genome assembly, chromosome: 1.
OY992832.1:11413914-11413935
AATGGCGTTGGAACAAGTTTTGTCAGATCA11413914GGATAGTGAGGATGAGGTTGATGACGATGTTGCTGATTTTGAAGATCGAAGG
WIN049.C21_L01 Cab Sauv pericarp normalized (WIN04) Vitis vinifera cDNA clone WIN049_L01 3', mRNA sequence.
EC932896.1:533-554
CCTTCGATCTTCAAAATCTGCAATGTCATC533ATCAACCTCATCCTCACTATCCCGATCTGACAATACTTGATCTAAAGCCATC
TSA: Reaumuria trigyna Unigene19524_C21 mRNA sequence.
JR250336.1:723-744
CCTCCGATCTTCAAGGTCTGATATTTCATC723ATCAACCTCATCCTCACTATCCCTATCGGATAGCACCTCTTCCAATGCCATT
TSA: Pyrus x bretschneideri Unigene16616_XinShao mRNA sequence.
JR611471.1:494-515
CCTTCGATCTTCAAGATCAGCAACATCATC494ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATT
TSA: Vitis vinifera Locus_14069_Transcript_2/3_Confidence_0.625.Vivi mRNA sequence.
KA156079.1:2020-2041
CCTTCGATCTTCAAAATCTGCAATGTCATC2020ATCAACCTCATCCTCACTATCCCGATCTGACAATACTTGATCTAAAGCCATC
TSA: Vitis vinifera Locus_14069_Transcript_3/3_Confidence_0.625.Vivi mRNA sequence.
KA156080.1:610-631
CCTTCGATCTTCAAAATCTGCAATGTCATC610ATCAACCTCATCCTCACTATCCCGATCTGACAATACTTGATCTAAAGCCATC
PP_LBa0043-J14.R PP_LBa Prunus persica genomic 3', genomic survey sequence.
FI961755.1:386-407
CCTTCGATCCTCAAAATCAGCAACATCATC386ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAATGTCATT
Vitis vinifera contig VV78X127056.15, whole genome shotgun sequence.
AM447481.2:7534-7555
CCTTCGATCTTCAAAATCTGCAATGTCATC7534ATCAACCTCATCCTCACTATCCCGATCTGACAATACTTGATCTAAAGCCATC
Papaver somniferum cultivar Roxanne chromosome 2.
CP048214.1:264784028-264784049
CCTTCGATCTTCAAAGTCAGCAATGTCATC264784028ATCAACCTCATCCTCACTATCCCGATCAGACAACACTTGCTCCATTGACATT
Vitis rotundifolia cultivar Noble chromosome 2.
CP092927.1:5633133-5633154
CCTTCGATCTTCAAAATCTGCAATGTCATC5633133ATCAACCTCATCCTCACTATCCCGATCTGACAATACTTGATCTAAAGCCATC
Vitis vinifera cultivar Pinot Noir 40024 chromosome 2.
CP126649.1:6126582-6126603
CCTTCGATCTTCAAAATCTGCAATGTCATC6126582ATCAACCTCATCCTCACTATCCCGATCTGACAATACTTGATCTAAAGCCATC
Vitis x doaniana cultivar PI 588149 chromosome 2.
CP128328.1:5971879-5971900
CCTTCGATCTTCAAAATCTGCAATGTCATC5971879ATCAACCTCATCCTCACTATCCCGATCTGACAATACTTGATCTAAAGCCATC
Vitis x doaniana cultivar PI 588149 chromosome 2.
CP128347.1:6063758-6063779
CCTTCGATCTTCAAAATCTGCAATGTCATC6063758ATCAACCTCATCCTCACTATCCCGATCTGACAATACTTGATCTAAAGCCATC
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:37311518-37311539
CCTTCGATCTTCAAGATCAGCAACATCATC37311518ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:37344609-37344630
CCTTCGATCTTCAAGATCAGCAACATCATC37344609ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:37406864-37406885
CCTTCGATCTTCAAGATCAGCAACATCATC37406864ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:37464974-37464995
CCTTCGATCTTCAAGATCAGCAACATCATC37464974ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:37808769-37808790
CCTTCGATCTTCAAGATCAGCAACATCATC37808769ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:37844981-37845002
CCTTCGATCTTCAAGATCAGCAACATCATC37844981ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:38672484-38672505
CCTTCGATCTTCAAGATCAGCAACATCATC38672484ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:38708575-38708596
CCTTCGATCTTCAAGATCAGCAACATCATC38708575ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:37715600-37715621
CCTTCGATCTTCAAGATCAGCAACATCATC37715600ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:37773711-37773732
CCTTCGATCTTCAAGATCAGCAACATCATC37773711ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:35671622-35671643
CCTTCGATCTTCAAGATCAGCAACATCATC35671622ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:35704212-35704233
CCTTCGATCTTCAAGATCAGCAACATCATC35704212ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC
Vitis vinifera cv. PN40024, annotated scaffold_1675.assembly12x.
FN596630.1:3971-3992
CCTTCGATCTTCAAAATCTGCAATGTCATC3971ATCAACCTCATCCTCACTATCCCGATCTGACAATACTTGATCTAAAGCCATC
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:37490999-37491020
CCTTCGATCTTCAAGATCAGCAACATCATC37490999ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:37525449-37525470
CCTTCGATCTTCAAGATCAGCAACATCATC37525449ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC
Malus domestica genome assembly, chromosome: 11.
OU696687.1:37846536-37846557
CCTTCGATCTTCAAGATCAGCAACATCATC37846536ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC
Malus domestica genome assembly, chromosome: 11.
OU696687.1:37904639-37904660
CCTTCGATCTTCAAGATCAGCAACATCATC37904639ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC
Malus domestica genome assembly, chromosome: 11.
OU744552.1:37809137-37809158
CCTTCGATCTTCAAGATCAGCAACATCATC37809137ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC
Malus domestica genome assembly, chromosome: 11.
OU744552.1:37848590-37848611
CCTTCGATCTTCAAGATCAGCAACATCATC37848590ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC
Malus domestica genome assembly, chromosome: 11.
OU744963.1:37042261-37042282
CCTTCGATCTTCAAGATCAGCAACATCATC37042261ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC
Malus domestica genome assembly, chromosome: 11.
OU744963.1:37100364-37100385
CCTTCGATCTTCAAGATCAGCAACATCATC37100364ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC
Malus domestica genome assembly, chromosome: 11.
OU745001.1:38544157-38544178
CCTTCGATCTTCAAGATCAGCAACATCATC38544157ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC
Malus domestica genome assembly, chromosome: 11.
OU745001.1:38578614-38578635
CCTTCGATCTTCAAGATCAGCAACATCATC38578614ATCAACCTCATCCTCACTATCCTGATCTGACAAAACTTGTTCCAACATCATC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GGATAGTGAGGATGAGGTTGAT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GGATAGTGAGGATGAGGTTGAT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.351 | 0.343 | search_plus_done; http://172.18.8.135:50400/match?q=GGATAGTGAGGATGAGGTTGAT&k=0&no_gap=0&offset=0&limit=50
0.598 | 0.247 | search_minus_done; http://172.18.8.135:50400/match?q=ATCAACCTCATCCTCACTATCC&k=0&no_gap=0&offset=0&limit=39
0.621 | 0.022 | cgi_end;

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