GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 08:37:01, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:2436860-2436879
AAGCAACCAAAATGATGGTTATTATAATTT2436860GGATCAAATTATGGCGGTGACTTCAGAACCTTCAAGTCTTATAGGCCCTC
Brassica napus genome assembly, chromosome: A09.
HG994363.1:2358669-2358688
AAGCAACCAAAATGATGGTTATTATAATTT2358669GGATCAAATTATGGCGGTGACTTCAGAACCTTCAAGTCTTATAGGCCCTC
Brassica rapa genome, scaffold: A09.
LR031568.1:2107021-2107040
AAGCAACCAAAATGATGGTTATTATAATTT2107021GGATCAAATTATGGCGGTGACTTCAGAACCTTCAAGTCTTATAGGCCCTC
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:2332976-2332995
AAGCAACCAAAATGATGGTTATTATAATTT2332976GGATCAAATTATGGCGGTGACTTCAGAACCTTCAAGTCTTATAGGCCCTC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' chromosome Cytogenetic chromosome 1 clone KBrH097M21, complete sequence.
AC155348.1:70530-70549
GAGGGCCTATAAGACTTGAAGGTTCTGAAG70530TCACCGCCATAATTTGATCCAAATTATAATAACCATCATTTTGGTTGCTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGATCAAATTATGGCGGTGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGATCAAATTATGGCGGTGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.128 | 0.119 | search_plus_done; http://172.18.8.135:50400/match?q=GGATCAAATTATGGCGGTGA&k=0&no_gap=0&offset=0&limit=50
0.156 | 0.028 | search_minus_done; http://172.18.8.135:50400/match?q=TCACCGCCATAATTTGATCC&k=0&no_gap=0&offset=0&limit=46
0.157 | 0.001 | cgi_end;

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