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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 08:47:18, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sylvilagus floridanus genome assembly, chromosome: 11.
OX463233.1:158756806-158756825
AGAATCTATTGGGTGCAGGGGGAAGGGCTG158756806GGATGACAGGGGAGTGAATGGAAGGTTCTGCAGCTCCTGGCCCCTGGGGG
Sequence 2876 from patent US 7557201.
GP471879.1:329-348
CCGCGACCACCACCATGATAAGGAAGAGGT329GGATGACAGGGGAGTGAATGCAGACTATGATGACAGTGGCTACGTCAAAA
BNLGHi7554 Six-day Cotton fiber Gossypium hirsutum cDNA 5' similar to (AC002986) Contains similarity to S. cerevisiae hypothetical protein YOR197w, gb|Z75105. ESTs gb|H37409, gb|AA395290, and gb|T4390
AI727245.1:334-353
CCGCGACCACCACCATGATAAGGAAGAGGT334GGATGACAGGGGAGTGAATGAAGACTATGATGACAGTGGCTACGTCAAAA
GA__Eb0026D01f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0026D01f, mRNA sequence.
BF276977.1:185-204
CCGCGATCACCACCATGATAAGGAAGAGGT185GGATGACAGGGGAGTGAATGAAGACTATGATGACAGTGGCTACGTCAAAA
GA__Ea0015M24r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0015M24r, mRNA sequence.
BM359040.1:128-147
CCGCGATCACCACCATGATAAGGAAGAGGT128GGATGACAGGGGAGTGAATGAAGACTATGATGACAGTGGCTACGTCAAAA
GA__Ed0066A01f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0066A01f, mRNA sequence.
BQ404078.1:184-203
CCGCGATCACCACCATGATAAGGAAGAGGT184GGATGACAGGGGAGTGAATGAAGACTATGATGACAGTGGCTACGTCAAAA
GA__Ed0090F12f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0090F12f, mRNA sequence.
BQ406095.1:536-555
CCGCGATCACCACCATGATAAGGAAGAGGT536GGATGACAGGGGAGTGAATGAAGACTATGATGACAGTGGCTACGTCAAAA
GR__Ea15E18.r GR__Ea Gossypium raimondii cDNA clone GR__Ea15E18 3', mRNA sequence.
CO093615.1:699-718
CCGCGACCACCACCATGATAAGGAAGAGGT699GGATGACAGGGGAGTGAATGAAGACTATGATGACAGTGGCTACGTCAAAA
GR__Ea24J12.r GR__Ea Gossypium raimondii cDNA clone GR__Ea24J12 3', mRNA sequence.
CO099605.1:630-649
CCGCGACCACCACCATGATAAGGAAGAGGT630GGATGACAGGGGAGTGAATGAAGACTATGATGACAGTGGCTACGTCAAAA
GR__Eb0049A11.r GR__Eb Gossypium raimondii cDNA clone GR__Eb0049A11 3', mRNA sequence.
CO112395.1:590-609
CCGCGACCACCACCATGATAAGGAAGAGGT590GGATGACAGGGGAGTGAATGAAGACTATGATGACAGTGGCTACGTCAAAA
GR__Eb018P21.r GR__Eb Gossypium raimondii cDNA clone GR__Eb018P21 3', mRNA sequence.
CO116634.1:620-639
CCGCGACCACCACCATGATAAGGAAGAGGT620GGATGACAGGGGAGTGAATGAAGACTATGATGACAGTGGCTACGTCAAAA
GR__Eb01G08.f GR__Eb Gossypium raimondii cDNA clone GR__Eb01G08 5', mRNA sequence.
CO117539.1:540-559
CCGCGACCACCACCATGATAAGGAAGAGGT540GGATGACAGGGGAGTGAATGAAGACTATGATGACAGTGGCTACGTCAAAA
GR__Eb45N04.r GR__Eb Gossypium raimondii cDNA clone GR__Eb45N04 3', mRNA sequence.
CO132780.1:707-726
CCGCGACCACCACCATGATAAGGAAGAGGT707GGATGACAGGGGAGTGAATGAAGACTATGATGACAGTGGCTACGTCAAAA
G.hir-15-20 DAA bolls drought stressed 291 15-20 DAA bolls from drought stressed plants Gossypium hirsutum cDNA, mRNA sequence.
DN801136.1:116-135
CCGCGACCACCACCATGATAAGGAAGAGGT116GGATGACAGGGGAGTGAATGAAGACTATGATGACAGTGGCTACGTCAAAA
EST1054262 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT543622.1:635-654
CCGCGACCACCACCATGATAAGGAAGAGGT635GGATGACAGGGGAGTGAATGAAGACTATGATGACAGTGGCTACGTCAAAA
EST1060329 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT549689.1:328-347
CCGCGACCACCACCATGATAAGGAAGAGGT328GGATGACAGGGGAGTGAATGAAGACTATGATGACAGTGGCTACGTCAAAA
EST1061209 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT550569.1:610-629
CCGCGACCACCACCATGATAAGGAAGAGGT610GGATGACAGGGGAGTGAATGAAGACTATGATGACAGTGGCTACGTCAAAA
EST1067246 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT556606.1:627-646
CCGCGACCACCACCATGATAAGGAAGAGGT627GGATGACAGGGGAGTGAATGAAGACTATGATGACAGTGGCTACGTCAAAA
EST1067418 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT556778.1:630-649
CCGCGACCACCACCATGATAAGGAAGAGGT630GGATGACAGGGGAGTGAATGAAGACTATGATGACAGTGGCTACGTCAAAA
EST1070285 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT559645.1:641-660
CCGCGACCACCACCATGATAAGGAAGAGGT641GGATGACAGGGGAGTGAATGAAGACTATGATGACAGTGGCTACGTCAAAA
GH_TS_1-03-01_D10_LibSeq2_25Nov03_074 Stem - 3-5 weeks after planting Gossypium hirsutum cDNA, mRNA sequence.
DW240915.1:666-685
CCGCGACCACTACCATGATAAGGAAGAGGT666GGATGACAGGGGAGTGAATGAAGACTATGATGACAGTGGCTACGTCAAAA
UFL_476_87 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES792557.1:689-708
ACCGCGACCACCACATGATAAGGAAGAGGT689GGATGACAGGGGAGTGAATGAAGACTATGATGACAGTGGCTACGTCAAAA
UFL_505_92 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES802938.1:711-730
CCGCGACCACCACCATGATAAGGAAGAGGT711GGATGACAGGGGAGTGAATGAAGACTATGATGACAGTGGCTACGTCAAAA
UFL_265_30 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES811392.1:217-236
CCGCGACCACCACCATGATAAGGAAGAGGT217GGATGACAGGGGAGTGAATGAAGACTATGATGACAGTGGCTACGTCAAAA
UFL_310_92 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES816296.1:198-217
CCGCGACCACCACCATGATAAGGAAGAGGT198GGATGACAGGGGAGTGAATGAAGACTATGATGACAGTGGCTACGTCAAAA
UFL_206_81 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES817187.1:700-719
CCGCGACCACCACCATGATAAGGAAGAGGT700GGATGACAGGGGAGTGAATGAAGACTATGATGACAGTGGCTACGTCAAAA
UFL_383_74 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES820184.1:688-707
CCGCGACCACCACCATGATAAGGAAGAGGT688GGATGACAGGGGAGTGAATGAAGACTATGATGACAGTGGCTACGTCAAAA
UFL_427_44 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES826566.1:691-710
CGCGGACCACCACCATGATAAGGAAGAGGT691GGATGACAGGGGAGTGAATGAAAACTATGATGACAGTGGCTACGTCCAAA
UFL_424_65 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES827209.1:142-161
CCGCGACCACCACCATGATTCCGAAGAGGT142GGATGACAGGGGAGTGAATGAAGACTATGATGACAGTGGCTACGTCAAAA
UFL_339_70 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES830847.1:645-664
CCGCGACCACCACCATGATAAGGAAGAGGT645GGATGACAGGGGAGTGAATGAAGACTATGATGACAGTGGCTACGTCAAAA
UFL_150_68 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES848038.1:477-496
CCGCGACCACCACCATGATAAGGAAGAGGT477GGATGACAGGGGAGTGAATGAAGACTATGATGACAGTGGCTACGTCAAAA
044G07 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EV483746.1:193-212
CCGCGACCACCACCATGATAAGGAAGAGGT193GGATGACAGGGGAGTGAATGAAGACTATGATGACAGTGGCTACGTCAAAA
088E11 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EV485824.1:476-495
CCGCGACCACCACCATGATAAGGAAGAGGT476GGATGACAGGGGAGTGAATGAAGACTATGATGACAGTGGCTACGTCAAAA
134C08 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EV488149.1:471-490
CCGCGACCACCACCATGATAAGGAAGAGGT471GGATGACAGGGGAGTGAATGAAGACTATGATGACAGTGGCTACGTCAAAA
134F10 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EV488169.1:471-490
CCGCGACCACCACCATGATAAGGAAGAGGT471GGATGACAGGGGAGTGAATGAAGACTATGATGACAGTGGCTACGTCAAAA
149G06 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EV488850.1:192-211
CCGCGACCACCACCATGATAAGGAAGAGGT192GGATGACAGGGGAGTGAATGAAGACTATGATGACAGTGGCTACGTCAAAA
177H11 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EV490129.1:192-211
CCGCGACCACCACCATGATAAGGAAGAGGT192GGATGACAGGGGAGTGAATGAAGACTATGATGACAGTGGCTACGTCAAAA
192F04 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EV490749.1:540-559
CCGAGAACACCACCATGATAAGGAAGAGGT540GGATGACAGGGGAGTGAATGACGACTATGATGACAGTGGCTACGTTCAAA
218A07 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EV491787.1:546-565
CCGCGACCACCACCATGATAAGGAAGAGGT546GGATGACAGGGGAGTGAATGAAGACTATGATGACAGTGGCTACGTCCAAA
sg149D01 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EV498759.1:560-579
CCGCGACCACCACCATGATAAGGAAGAGGT560GGATGACAGGGGAGTGAATGAAGACTATGATGACAGTGGCTACGTCAAAA
EST000141 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 01-L04 5', mRNA sequence.
GR706941.1:610-629
CCGCGACCACCACCATGATAAGGAAGAGGT610GGATGACAGGGGAGTGAATGAAGACTATGGAGTGAATGAAGACTATGATG
EST005231 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 20-D06 5', mRNA sequence.
GR712031.1:610-629
CCGCGACCACCACCATGATAAGGAAGAGGT610GGATGACAGGGGAGTGAATGAAGACTATGGAGTGAATGAAGACTATGATG
E06-G09302555-19-240-6 cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone E06-G09302555-19-240-6, mRNA sequence.
JG838782.1:246-265
CCGCGATCACCACCATGATAAGGAAGAGGT246GGATGACAGGGGAGTGAATGAAGACTATGATGACAGTGGCTACGTCAAAA
H07-42H07 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK792432.1:716-735
CCGCGACCACCACCATGATAAGGAAGAGGT716GGATGACAGGGGAGTGAATGAAGACTATGGAGTGAATGAAGACTAT
Gossypium herbaceum isolate Zhongcao1 chromosome 13.
CP106688.1:22363654-22363673
CCGCGACCACCACCATGATAAGGAAGAGGT22363654GGATGACAGGGGAGTGAATGAAGACTATGGAGTGAATGAAGACTATGATG
Gossypium bickii isolate GPG1lz chromosome 13.
CP106709.1:32242358-32242377
CCGCGACCACCACCACGATAAGGAAGAGGT32242358GGATGACAGGGGAGTGAATGAAGACTATGATGACAGTGGCTACGTCAAAA
Gossypium rotundifolium isolate GPK201 chromosome 13.
CP106734.1:36696006-36696025
CCGCGACCACCACCATGATAAGGAAGAGGC36696006GGATGACAGGGGAGTGAATGAAGACTATGATGACAGTGGCTACGTCAAAA
Erpetoichthys calabaricus genome assembly, chromosome: 15.
LR536446.2:80308696-80308715
TTCTGGGGGAATCTCTTCCTGCTCTTTTAC80308696CATTCACTCCCCTGTCATCCTGATATTGTCATGCAGCTCTCCCTAGGGAG
D10_410395.46.S1103303053.anther-SP1486 Normalized cDNA library of anther of upland cotton cultivar CCRI36 Gossypium hirsutum cDNA 3', mRNA sequence.
JK699209.1:797-816
TTTTGACGTAGCCACTGTCATCACAGTCTT797CATTCACTCCCCTGTCATCCAC
F10_427267.70.S1104123605.anther-SP12550 Normalized cDNA library of anther of upland cotton cultivar CCRI36 Gossypium hirsutum cDNA 3', mRNA sequence.
JK701735.1:821-840
TTTTGACGTAGCCACTGTCATCATAGTCTT821CATTCACTCCCCTGTCATCCACCTCTTCCTATCAT
G03_432347.75.S1104152650.anther-SP15435 Normalized cDNA library of anther of upland cotton cultivar CCRI36 Gossypium hirsutum cDNA 3', mRNA sequence.
JK702256.1:749-768
TTTTGACGTAGCCACTGTCATCATAGTCTT749CATTCACTCCCCTGTCATCCACCTCTTCCTTATCATGGTGGTGGTCGCGG
Gossypium raimondii isolate D5-4 chromosome D5_13.
CP032565.1:41259824-41259843
TTTTGACGTAGCCACTGTCATCATAGTCTT41259824CATTCACTCCCCTGTCATCCACCTCTTCCTTATCATGGTGGTGGTCGCGG
Gossypium turneri isolate D10-2 chromosome D10_13.
CP032583.1:43579328-43579347
TTTTGACGTAGCCACTGTCATCATAATCTT43579328CATTCACTCCCCTGTCATCCACCTCTTCCTTATCATGGTGGTGGTCGCGG
Gossypium herbaceum isolate GPA1alz chromosome 13.
CP106700.1:101211709-101211728
CATCATAGTCTTCATTCACTCCATAGTCTT101211709CATTCACTCCCCTGTCATCCACCTCTTCCTTATCATGGTGGTGGTCGCGG
Sympetrum striolatum genome assembly, chromosome: 7.
OX388347.1:61215375-61215394
ACGCTTAGGAGAAATACGGTGGCAAATAAT61215375CATTCACTCCCCTGTCATCCAAGAAGGGAAATTTCACACCTGAAAATGCG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGATGACAGGGGAGTGAATG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGATGACAGGGGAGTGAATG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
2.908 | 2.899 | search_plus_done; http://172.18.8.135:50400/match?q=GGATGACAGGGGAGTGAATG&k=0&no_gap=0&offset=0&limit=50
3.257 | 0.349 | search_minus_done; http://172.18.8.135:50400/match?q=CATTCACTCCCCTGTCATCC&k=0&no_gap=0&offset=0&limit=3
3.263 | 0.006 | cgi_end;

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