GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-06 02:48:31, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH054_01122m, 5' end sequence.
AB450727.1:319-341
CCCTCGCAAAACCTACCCATTCATGGCCAA319GGATGCAGAAACAATCCATCAGTTGCGGCAAAGTCGAGTTTTCTATAATGGGT
010717ABBA001713HT (ABBA) Pacific Rose spur buds from OFF trees Malus domestica cDNA clone ABBA001713, mRNA sequence.
CN900718.1:401-423
CCCTCGCAAAACCTACCCATTCATGGCCAA401GGATGCAGAAACAATCCATCAGTTGCGGCAAAGTCGAGTTTTCTATAATGGGT
Mdfrjg3506M08.g1 Apple_EST_Mdfrjg Malus domestica cDNA 5' similar to ref|NP_173800.2| expressed protein [Arabidopsis thaliana] gb|AAL77657.1| At1g23880/T23E23_8 [Arabidopsis thaliana] gb|AAM26643.1| A
GO541855.1:366-388
CCCTCGCAAAACCTACCCATTCATGGCCAA366GGATGCAGAAACAATCCATCAGTTGCGGCAAAGTCGAGTTTTCTATAATGGGT
Pyrus pyrifolia mRNA, clone: NFW2_01_22, 5' end sequence, expressed in flower bud.
HX762128.1:319-341
CCCTCGCAAAACCTACCCATTCATGGCCAA319GGATGCAGAAACAATCCATCAGTTGCGGCAAAGTCGAGTTTTCTATAATGGGT
TSA: Pyrus pyrifolia mRNA, contig: contig_4892.
FX432727.1:319-341
CCCTCGCAAAACCTACCCATTCATGGCCAA319GGATGCAGAAACAATCCATCAGTTGCGGCAAAGTCGAGTTTTCTATAATGGGT
TSA: Pyrus communis mRNA, contig: lc44508.
FX651306.1:50-72
CCCTCGCAAAACCTACCCATTCATGGCCAA50GGATGCAGAAACAATCCATCAGTTGCGGCAAAGTCGAGTTTTCTATAATGGGT
TSA: Pyrus x bretschneideri Unigene11405_XinShao mRNA sequence.
JR606451.1:1021-1043
CCCTCGCAAAACCTACCCATTCATGGCCAA1021GGATGCAGAAACAATCCATCAGTTGCGGCAAAGTCGAGTTTTCTATAATGGGT
Mdfrjg3506M08_e7354.g1 Apple_EST_Mdfrjg Malus domestica cDNA 5', mRNA sequence.
GO542378.1:487-509
ACCCATTATAGAAAACTCGACTTTGCCGCA487ACTGATGGATTGTTTCTGCATCCTTGGCCATGAATGAGGTAGGTTTTGCGAGG
Pyrus pyrifolia mRNA, clone: NFW2_01_22, 3' end sequence, expressed in flower.
HX743531.1:447-469
ACCCATTATAGAAAACTCGACTTTGCCGCA447ACTGATGGATTGTTTCTGCATCCTTGGCCATGAATGGGTAGGTTTTGCGAGGG
Malus hybrid cultivar cultivar Flame chromosome 16.
CP141925.1:5646120-5646142
ACCCATTATAGAAAACTCGACTTTGCCGCA5646120ACTGATGGATTGTTTCTGCATCCTTGGCCATGAATGGGTAGGTTTTGCGAGGG
Malus hybrid cultivar cultivar Flame chromosome 16.
CP141942.1:6120731-6120753
ACCCATTATAGAAAACTCGACTTTGCCGCA6120731ACTGATGGATTGTTTCTGCATCCTTGGCCATGAATGGGTAGGTTTTGCGAGGG
Malus hybrid cultivar cultivar Royalty chromosome 16.
CP141968.1:5909756-5909778
ACCCATTATAGAAAACTCGACTTTGCCGCA5909756ACTGATGGATTGTTTCTGCATCCTTGGCCATGAATGGGTAGGTTTTGCGAGGG
Malus hybrid cultivar cultivar Royalty chromosome 16.
CP141985.1:6514764-6514786
ACCCATTATAGAAAACTCGACTTTGCCGCA6514764ACTGATGGATTGTTTCTGCATCCTTGGCCATGAATGGGTAGGTTTTGCGAGGG
Malus hybrid cultivar cultivar SH6 chromosome 16.
CP143373.1:6231339-6231361
ACCCATTATAGAAAACTCGACTTTGCCGCA6231339ACTGATGGATTGTTTCTGCATCCTTGGCCATGAATGGGTAGGTTTTGCGAGGG
Malus hybrid cultivar cultivar SH6 chromosome 16.
CP143390.1:5705612-5705634
ACCCATTATAGAAAACTCGACTCTGCCGCA5705612ACTGATGGATTGTTTCTGCATCCTTGGCCATGAATGGGTAGGTTTTGCGAGGG
Malus sylvestris genome assembly, chromosome: 16.
OU696518.1:5871059-5871081
ACCCATTATAGAAAACTCGACTTTGCCGCA5871059ACTGATGGATTGTTTCTGCATCCTTGGCCATGAATGGGTAGGTTTTGCGAGGG
Malus domestica genome assembly, chromosome: 16.
OU696692.1:6230033-6230055
ACCCATTATAGAAAACTCGACTTTGCCGCA6230033ACTGATGGATTGTTTCTGCATCCTTGGCCATGAATGGGTAGGTTTTGCGAGGG
Malus domestica genome assembly, chromosome: 16.
OU744557.1:6306626-6306648
ACCCATTATAGAAAACTCGACTTTGCCGCA6306626ACTGATGGATTGTTTCTGCATCCTTGGCCATGAATGGGTAGGTTTTGCGAGGG
Malus domestica genome assembly, chromosome: 16.
OU744968.1:6210468-6210490
ACCCATTATAGAAAACTCGACTTTGCCGCA6210468ACTGATGGATTGTTTCTGCATCCTTGGCCATGAATGGGTAGGTTTTGCGAGGG
Malus domestica genome assembly, chromosome: 16.
OU745006.1:6243446-6243468
ACCCATTATAGAAAACTCGACTTTGCCGCA6243446ACTGATGGATTGTTTCTGCATCCTTGGCCATGAATGGGTAGGTTTTGCGAGGG
Malus x robusta genome assembly, chromosome: 3.
OY720327.1:6583572-6583594
ACCCATTATAGAAAACTCGACTTTGCCGCA6583572ACTGATGGATTGTTTCTGCATCCTTGGCCATGAATGGGTAGGTTTTGCGAGGG
Crataegus laevigata genome assembly, chromosome: 11.
OY756948.1:6475895-6475917
ACCCATTATAGAAAACTCGACTTTGCCGCA6475895ACTGATGGATTGTTTCTGCATCCTTGGCCATGAATGGGTAGGTTTTGCGAGGG
Pyrus communis genome assembly, chromosome: 4.
OY757071.1:5126744-5126766
ACCCATTATAGAAAACTTGACTTTGCCGCA5126744ACTGATGGATTGTTTCTGCATCCTTGGCCATGAATGGGTAGGTTTTGCGAGGG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GGATGCAGAAACAATCCATCAGT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GGATGCAGAAACAATCCATCAGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.451 | 0.442 | search_plus_done; http://172.18.8.135:50400/match?q=GGATGCAGAAACAATCCATCAGT&k=0&no_gap=0&offset=0&limit=50
0.783 | 0.332 | search_minus_done; http://172.18.8.135:50400/match?q=ACTGATGGATTGTTTCTGCATCC&k=0&no_gap=0&offset=0&limit=43
0.793 | 0.011 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).