GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-17 08:48:43, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Lutra lutra genome assembly, chromosome: 4.
LR738406.1:170903683-170903702
GTAAAATTCTCTTTGCTAAAAAATGAATTT170903683GGCAAGCTCATGTGAAGACAGTGGCAACTCAGTTTGTGATAAAAGGTAGG
Meles meles genome assembly, chromosome: 1.
OV277441.1:190130392-190130411
AGTAAAATTCTCTTGCTAAAAAATGAATTT190130392GGCAAGCTCATGTGAAGACAGTGGCAACTCAGGTTGTGATTAAAAAGTAG
Martes martes genome assembly, chromosome: 4.
OY734066.1:165027990-165028009
GTAAAATTCTCTCTGCTAAAAAATGAATTT165027990GGCAAGCTCATGTGAAGACAGTGGCAACTCAGGTTGTGATAAAAAATAGG
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:65051991-65052010
ACTCATGGAGCCCACATGAATAGACTCATG65051991GGCAAGCTCATGTGAAGACATAGCAACACCAACCACATAGAGAGAGTAAC
Sphagnum troendelagicum genome assembly, chromosome: 13.
OZ019924.1:2012909-2012928
CCTCACTTAAAGAGAATCTTCCACAATGGT2012909GGCAAGCTCATGTGAAGACAAAATAAAATCAATCAAAGTTCACAAGATAT
Sphagnum jensenii genome assembly, chromosome: 13.
OZ020108.1:2871065-2871084
CGTAACTTAAAGAGAATCTTCCACAATGGT2871065GGCAAGCTCATGTGAAGACAAAATAAAATCAATCAAAGTTCACAAGATAT
Mobula hypostoma genome assembly, chromosome: 4.
OY992595.1:135328799-135328818
TTCAATAATGCTGTTAGTTAATGATCATTT135328799GGCAAGCTCATGTGAAGACACCAGCTGGAGTATTCAAATCCAAAATGGAA
Martes foina genome assembly, chromosome: 4.
OZ199607.1:26499501-26499520
CCTACTTTTTATCACAACCTGAGTTGCCAC26499501TGTCTTCACATGAGCTTGCCAAATTCATTTTTTAGCAGAGAGAATTTTAC
oed92b05.g1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BZ025595.1:91-110
GTTACTCTCTCTATGTGGTTGGTGTTGCTA91TGTCTTCACATGAGCTTGCCCATGAGTCTATTCATGTGGGCTCCATGAGT
Brassica napus cultivar Xiang5A chromosome 19.
CP151914.1:3499217-3499236
GTTACTCTCTCTATGTGGTTGGTGTTGCTA3499217TGTCTTCACATGAGCTTGCCCATGAGTCTATTCATGTGGGCTCCATGAGT
Brassica napus genome assembly, chromosome: C09.
HG994373.1:4111505-4111524
GTTACTCTCTCTATGTGGTTGGTGTTGCTA4111505TGTCTTCACATGAGCTTGCCCATGAGTCTATTCATGTGGGCTCCATGAGT
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:4228299-4228318
GTTACTCTCTCTATGTGGTTGGTGTTGCTA4228299TGTCTTCACATGAGCTTGCCCATGAGTCTATTCATGTGGGCTCCATGAGT
Sphagnum tenellum genome assembly, chromosome: 8.
OY998149.1:18615945-18615964
CATATCTTGTGAACTTGATTGATTTTATTT18615945TGTCTTCACATGAGCTTGCCCCATTGTGGAGGATTCTCTTTAAGTTAGGA
Sphagnum troendelagicum genome assembly, chromosome: 13.
OZ019905.1:125337-125356
ATATCTTGTGAACTTTGGTTGATTTTATTT125337TGTCTTCACATGAGCTTGCCACCATTGTGGAAGATTCTCTTTAAGTTAGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGCAAGCTCATGTGAAGACA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGCAAGCTCATGTGAAGACA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.099 | 0.090 | search_plus_done; http://172.18.8.135:50800/match?q=GGCAAGCTCATGTGAAGACA&k=0&no_gap=0&offset=0&limit=50
0.136 | 0.037 | search_minus_done; http://172.18.8.135:50800/match?q=TGTCTTCACATGAGCTTGCC&k=0&no_gap=0&offset=0&limit=43
0.141 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).