GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 01:20:35, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

BOHVQ04TR BO_2_3_KB Brassica oleracea genomic clone BOHVQ04, genomic survey sequence.
BH705227.1:549-566
ATATTTATAGTCTCTAAAATCTCAGATCTA549GGCACAGTCGCACGAAACATCGAGATCTTCCCCAAAAATTTTGGAGGT
Brassica napus genome assembly, chromosome: C08.
HG994372.1:40727447-40727464
ATATTTATAGTCTCTAAAATTTCAGATCTA40727447GGCACAGTCGCACGAAACATCGACCTTCCCCAAAAATTTTGGAGGTTA
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:50005387-50005404
ATATTTATAGTCTCTAAAATTTCAGATCTA50005387GGCACAGTCGCACGAAACATCGACCTTCCCCAAAAATTTTGGAGGTTA
Eristalinus sepulchralis genome assembly, chromosome: 4.
OX122885.1:59544052-59544069
GCCTAAATTGAAATTCTATCACCTTCAAAG59544052GGCACAGTCGCACGAAACAAACTCCAACTAGTCCACCACCGAAAGTCA
Heliothis peltigera genome assembly, chromosome: 19.
OY292340.1:8376958-8376975
GAGCGGGAGGGTCATGCTAAGCGTCGTCAC8376958GGCACAGTCGCACGAAACTCAAATTTTAACACTCTTACTCGCAGTAAT
Andrena praecox genome assembly, chromosome: 3.
OZ010730.1:7441578-7441595
GCCGGGAACAGCGCCCGGCACGCATGGAGT7441578GGCACAGTCGCACGAAACGGGGAGTATTTGTAAAAAGAATACGCGCTA
abf82e02.x1 Soybean random, unfiltered genomic library Glycine max genomic, genomic survey sequence.
CL887079.1:373-390
TAGGAGAAGAGGCTCCACAAGATCCACCGA373GTTTCGTGCGACTGTGCCATCCCAATTTTCAACTAGGGAACT
BoTo69I02/FE BOTO1 Brassica oleracea genomic, genomic survey sequence.
ET052021.1:401-418
CCTCCAAAATTTTTGGGGGAAGATCTCGAT401GTTTCGTGCGACTGTGCCTAG
BOT01-69I2TF BOT01 Brassica oleracea genomic clone BOT01-69I2, genomic survey sequence.
FI715622.1:398-415
ACCTCCAAAATTTTTGGGGAAGATCTCGAT398GTTTCGTGCGACTGTGCCTAGATCTGAGATTTTAGAGACTATAAATAT
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:954045-954062
TAACCTCCAAAATTTTTGGGGAAGGTCGAT954045GTTTCGTGCGACTGTGCCTAGATCTGAAATTTTAGAGACTATAAATAT
Glycine max cultivar Williams 82 chromosome 8.
CP126433.1:36469545-36469562
TAGGAGAGGAATCTCCACAAGATCCGCCAA36469545GTTTCGTGCGACTGTGCCATCCCAATTCCCAAGTGGGGAATTGGCGCG
Glycine max cultivar Williams 82 chromosome 13.
CP126438.1:4217372-4217389
TAGGAGAGGAGGCTCCACAAGATCCACCAA4217372GTTTCGTGCGACTGTGCCATCCCAATTCCCAAGTGGGGAACTGGCGCG
Glycine max cultivar Williams 82 chromosome 13.
CP126438.1:9893078-9893095
TAGGAGAAGAGGCTCCACAAGATCCACCGA9893078GTTTCGTGCGACTGTGCCATCCCAATTTTCAACTAGGGAACTGGCACG
Glycine max cultivar Williams 82 chromosome 19.
CP126444.1:34597382-34597399
TAGGAGGAGAAGCTCCACAAGATCCGCCGA34597382GTTTCGTGCGACTGTGCCATCCCAATTTCCAACTGGGGAATTGGCACG
Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence.
CP009292.1:81394-81411
TCATCGTACTGGTTGAGGAGCAGACTGATG81394GTTTCGTGCGACTGTGCCAGGCGCTTGGTGCGGATACGCCGCGTGGCG
Polietes domitor genome assembly, chromosome: 5.
OX377622.1:48270562-48270579
TCAGATTTTTTTAATTTTATTTCGTTTTTG48270562GTTTCGTGCGACTGTGCCCTATAACACTGTCTATCCCTATCAGCCATA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGCACAGTCGCACGAAAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGCACAGTCGCACGAAAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.330 | 0.321 | search_plus_done; http://172.18.8.135:50400/match?q=GGCACAGTCGCACGAAAC&k=0&no_gap=0&offset=0&limit=50
0.499 | 0.169 | search_minus_done; http://172.18.8.135:50400/match?q=GTTTCGTGCGACTGTGCC&k=0&no_gap=0&offset=0&limit=44
0.506 | 0.007 | cgi_end;

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