GGGenome | Results

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2025-04-08 12:09:08, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

GR__Ea39G21.r GR__Ea Gossypium raimondii cDNA clone GR__Ea39G21 3', mRNA sequence.
CO077579.1:36-55

CAAATCATATTACAAAAGATCGGTTTAGAA36GGCACCTTGGAATACATCTCTGATTTGCTCTTCAGCGTGAAGAAGAAGAA

CM053B12 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
DR457242.1:260-279

ATCCATTTGAGACGAAAGATGGGAGTAGAA260GGCACCTTGGAATACATCTCTGATTTGCTTAGCAGCGTGAAGAAGAAGAA

GH_LSL06F05.f GH_LSL Gossypium hirsutum cDNA clone GH_LSL06F05 5', mRNA sequence.
DV849081.1:160-179

AATCATATATTACAAAAGATGGGAGTAGAA160GGCACCTTGGAATACATCTCTGATTTGCTTAGCAGCGTGAAGAAGAAGAA

GH_TMIRS_153_C04_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW511432.1:173-192

AATCATATATTACAAAAGATGGGAGTAGAA173GGCACCTTGGAATACATCTCTGATTTGCTTAGCAGCGTGAAGAAGAAGAA

mhczaa0_021423.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_021423.z1, mRNA sequence.
JG837502.1:336-355

CAAATCATATTACAAAAGATGGGAGTAGAA336GGCACCTTGGAATACATCTCTGATTTGCTTAGCAGCGTGAAGAAGAAGAA

mhczaa0_025134.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_025134.z1, mRNA sequence.
JG838242.1:348-367

CAAATCATATTACAAAAGATGGGAGTAGAA348GGCACCTTGGAATACATCTCTGATTTGCTTAGCAGCGTGAAGAAGAAGAA

B06-GC3921 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK801559.1:216-235

CAAATCATATTACAAAAGATGGGAGTAGAA216GGCACCTTGGAATACATCTCTGATTTGCTTAGCAGCGTGAAGAAGAAGAA

C09-GC7371 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK803722.1:48-67

CAAACCATATTACAAAAGATGGGAGTAGAA48GGCACCTTGGAATACATCTCTGATTTGCTTAGCAGCGTGAAGAAGAAGAA

B08-GC1122 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK804246.1:53-72

CAAATCATATTACAAAAGATGGGAGTAGAA53GGCACCTTGGAATACATCTCTGATTTGCTTAGCAGCGTGAAGAAGAAGAA

C05-GC3934 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK809123.1:48-67

CAAATCATATTACAAAAGATGGGAGTAGAA48GGCACCTTGGAATACATCTCTGATTTGCTTAGCAGCGTGAAGAAGAAGAA

F10-GC10934 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK810472.1:216-235

CAAATCATATTACAAAAGATGGGAGTAGAA216GGCACCTTGGAATACATCTCTGATTTGCTTAGCAGCGTGAAGAAGAAGAA

Gossypium herbaceum isolate Zhongcao1 chromosome 1.
CP106687.1:7066601-7066620

CAAATCATATTACAAAAGATGGGAGTAGAA7066601GGCACCTTGGAATACATCTCTGATTTGCTTAGCAGCGTGAAGAAGAAGAA

Gossypium rotundifolium isolate GPK201 chromosome 1.
CP106722.1:11248452-11248471

CAAATAATATTGCAAAAGATGGGAGTAGAA11248452GGCACCTTGGAATACATCTCTGATTTGCTTAGCAGCGTGAAGAAGAAGAA

Microcos paniculata chromosome 6b.
CP131452.1:26378373-26378392

AAGGTAAAACAACAAAAAATGGGAGTTGAA26378373GGCACCTTGGAATACATCTCTGATTTGCTTAGCAGCGTGAAGAAGAAGAA

Microcos paniculata chromosome 6a.
CP131461.1:26550093-26550112

AAGGTAAAACAACAAAAAATGGGAGTTGAA26550093GGCACCTTGGAATACATCTCTGATTTGCTTAGCAGCGTGAAGAAGAAGAA

Theobroma grandiflorum isolate C1074 chromosome 8.
CP142126.1:20731030-20731049

CATCAGAAGTAAAAGGAAATGGGAGTTGAA20731030GGCACCTTGGAATACATCTCTGATTTGCTCAGCAGCGTGAAGAAGAAAAA

Theobroma cacao genome assembly, chromosome: 8.
OY284465.1:18741877-18741896

CATCAGAAGTAAAAGAACATGGGAGTTGAA18741877GGCACCTTGGAATACATCTCTGATTTGCTTAGCAGCGTGAAGAAGAAAAA

Hibiscus tridactylites genome assembly, chromosome: 9.
OY288273.1:88012617-88012636

TAAGAAAGTTGATAAAAGATGGGAGTGGAA88012617GGCACCTTGGAATACATCTCCGATTTGCTTAGCAGCGTGAAGAAGAAAAA

GH_TMIRS_153_C04_R Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW511433.1:452-471

TTCTTCTTCTTCACGCTGCTAAGCAAATCA452GAGATGTATTCCAAGGTGCCTTCTACTCCCATCTTTTGTAATATATGATT

rayctn0_0134_E08.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO099568.1:478-497

TTCTTCTTCTTCACGCTGCTAAGCAAATCA478GAGATGTATTCCAAGGTGCCTTCTACTCCCATCTTTTGTAATATGATTTG

Gossypioides kirkii clone GKH058K14-jmr, complete sequence.
AC243092.1:109348-109367

TTCTTCTTCTTCACGCTGCTAAGCAAATCA109348GAGATGTATTCCAAGGTGCCTTCTACTCCCATCTTGATTTGAAGGATTAG

Gossypium raimondii clone GR__Ba0142D21-hnv, complete sequence.
AC243121.1:81532-81551

TTCTTCTTCTTCACGCTGCTAAGCAAATCA81532GAGATGTATTCCAAGGTGCCTTCTACTCCCATCTTTTGTAATATGATTTG

Gossypioides kirkii chromosome KI_01.
CP032244.1:34162222-34162241

TTCTTCTTCTTCACGCTGCTAAGCAAATCA34162222GAGATGTATTCCAAGGTGCCTTCTACTCCCATCTTGATTTGAAGGATTAG

Gossypium raimondii isolate D5-4 chromosome D5_01.
CP032553.1:51547903-51547922

TTCTTCTTCTTCACGCTGCTAAGCAAATCA51547903GAGATGTATTCCAAGGTGCCTTCTACTCCCATCTTTTGTAATATGATTTG

Gossypium herbaceum isolate GPA1alz chromosome 1.
CP106699.1:118680418-118680437

TTCTTCTTCTTCACGCTGCTAAGCAAATCA118680418GAGATGTATTCCAAGGTGCCTTCTACTCCCATCTTTTGTAATATGATTTG

Gossypium bickii isolate GPG1lz chromosome 1.
CP106715.1:121655558-121655577

TTCTTCTTCTTCACGCTGCTAAGCAAATCA121655558GAGATGTATTCCAAGGTGCCTTCTACTCCCATCTTTTGTAATACGATTTG

Theobroma cacao isolate Sca6 chromosome 8.
CP139298.1:5736260-5736279

TTTTTCTTCTTCACGCTGCTAAGCAAATCA5736260GAGATGTATTCCAAGGTGCCTTCAACTCCCATGTTCTTTTACTTCTGATG

Corchorus olitorius cultivar Sudan Green microsatellite JROm290 sequence.
KT889645.1:291-310

TTCTTCTTCTTGACGCTGCTAAGCAAATCA291GAGATGTATTCCAAGGTGCCTTCAACTCCCATTTTTTGTTACTGTAAGAA

Theobroma cacao genome assembly, chromosome: VIII.
LT594795.1:5655900-5655919

TTTTTCTTCTTCACGCTGCTAAGCAAATCA5655900GAGATGTATTCCAAGGTGCCTTCAACTCCCATGTTCTTTTACTTCTGATG

Theobroma cacao genome assembly, chromosome: 8.
OY284445.1:5761450-5761469

TTTTTCTTCTTCACGCTGCTAAGCAAATCA5761450GAGATGTATTCCAAGGTGCCTTCAACTCCCATGTTCTTTTACTTCTGATG

Theobroma cacao genome assembly, chromosome: 8.
OY284455.1:5724233-5724252

TTTTTCTTCTTCACGCTGCTAAGCAAATCA5724233GAGATGTATTCCAAGGTGCCTTCAACTCCCATGTTCTTTTACTTCTGATG

Hibiscus tridactylites genome assembly, chromosome: 4.
OY288268.1:13433147-13433166

TTTTTCTTCTTCATGCTGCTAAGCAAATCG13433147GAGATGTATTCCAAGGTGCCTTCCACTCCCATCTTTTATCAACTTTCTTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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Debug Info:

0.009 | 0.009 | search_start;
0.891 | 0.882 | search_plus_done; http://172.18.8.135:50400/match?q=GGCACCTTGGAATACATCTC&k=0&no_gap=0&offset=0&limit=50
1.064 | 0.173 | search_minus_done; http://172.18.8.135:50400/match?q=GAGATGTATTCCAAGGTGCC&k=0&no_gap=0&offset=0&limit=32
1.074 | 0.009 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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