GGGenome | Results

2025-04-09 16:00:48, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

KR 1020010006352-A/4: DNA Marker, primer kits, and method for effective detection ofclubroot disease resistant plant.
DI015647.1:1-20

1GGCACGTGAGAAAAACGTAT

KR 1020010006352-A/1: DNA Marker, primer kits, and method for effective detection ofclubroot disease resistant plant.
DI085192.1:27-46

GATGAGTCCTGAGTAACACAAATCTT27GGCACGTGAGAAAAACGTATCTCTCCTTCAATATCAATACCCTATATAAG

KR 1020040013638-A/1: DNA Marker for the Clubroot Resistant Gene.
DI139707.1:1-20

1GGCACGTGAGAAAAACGTAT

Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:24967611-24967630

TATACTCATGACTTTATTAACACAAATCTT24967611GGCACGTGAGAAAAACGTATCTCTCCTTCAATATCAATACCCTATATAAG

Brassica rapa genome, scaffold: A03.
LR031572.1:24577640-24577659

TATACTCATGACTTTATTAACACAAATCTT24577640GGCACGTGAGAAAAACGTATCTCTCCTTCAATATCAATACCCTATATAAG

Brassica rapa genome assembly, chromosome: A03.
LS974619.2:24705477-24705496

TATACTCATGACTTTATTAACACAAATCTT24705477GGCACGTGAGAAAAACGTATCTCTCCTTCAATATCAATACCCTATATAAG

Brassica rapa clone BrH69E01, WORKING DRAFT SEQUENCE, 2 unordered pieces.
AC137927.1:78441-78460

CTTATATAGGGTATTGATATTGAAGGAGAG78441ATACGTTTTTCTCACGTGCCAAGATTTGTGTTAATAAAGTCATGAGTATA

Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH069E01, complete sequence.
AC172878.1:42047-42066

CTTATATAGGGTATTGATATTGAAGGAGAG42047ATACGTTTTTCTCACGTGCCAAGATTTGTGTTAATAAAGTCATGAGTATA

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039B11, complete sequence.
AC241020.1:131396-131415

CTTATATAGGGTATTGATATTGAAGGAGAG131396ATACGTTTTTCTCACGTGCCAAGATTTGTGTTAATAAAGTCATGAGTATA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.135 | 0.127 | search_plus_done; http://172.18.8.135:50400/match?q=GGCACGTGAGAAAAACGTAT&k=0&no_gap=0&offset=0&limit=50
0.167 | 0.032 | search_minus_done; http://172.18.8.135:50400/match?q=ATACGTTTTTCTCACGTGCC&k=0&no_gap=0&offset=0&limit=44
0.169 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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