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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 15:28:09, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

021121ABMA002070HT (ABMA) M9 phloem Malus domestica cDNA clone ABMA002070, mRNA sequence.
CN911486.1:402-422
GTGAAAGGCACTGAACGGTTCGCAAAATCG402GGCACTCTGTTTCTTATCAACTTATGCTTCTAAAATATTGAATGTTTAGTG
Mdfw2056o08.y1 Mdfw Malus domestica cDNA clone Mdfw2056o08 5' similar to TR:Q9SSY2 Q9SSY2 CS-IAA2, mRNA sequence.
CO052016.1:448-468
GTGAAAGGCACTGAACGGTTCGCAAAATCG448GGCACTCTGTTTCTTATCAACTTATGCTTCTAAAATATTGAATGTTTAGTG
Mddb5021d07.y1 Mddb Malus domestica cDNA clone Mddb5021d07 5', mRNA sequence.
CO903145.1:36-56
CTGTCGGGCACTGAACGGTTCGCAAAATCG36GGCACTCTGTTTCTTATCAACTTATGCTTCTAAAATATTGAATGTTTAGTG
Mdrtp1010L17.g1 Apple_EST_Mdrtp Malus domestica x Malus sieversii cDNA similar to emb|CAC84706.1| aux/IAA protein [Populus tremula x Populus tremuloides], mRNA sequence.
DT040598.1:325-345
GTGAAAGGCACTGAACGGTTCGCAAAATCG325GGCACTCTGTTTCTTATCAACTTATGCTTCTAAAATATTGAATGTTTAGTG
Mdrtp1004I07.g1 Apple_EST_Mdrtp Malus domestica x Malus sieversii cDNA similar to emb|CAC84706.1| aux/IAA protein [Populus tremula x Populus tremuloides], mRNA sequence.
DT040861.1:280-300
GTGAAAGGCACTGAACGGTTCGCAAAATCG280GGCACTCTGTTTCTTATCAACTTATGCTTCTAAAATATTGAATGTTTAGTG
Mdrtp1008K14.g1 Apple_EST_Mdrtp Malus domestica x Malus sieversii cDNA similar to emb|CAC84706.1| aux/IAA protein [Populus tremula x Populus tremuloides], mRNA sequence.
DT043145.1:610-630
GTGAAAGGCACTGAACGGTTCGCAAAATCG610GGCACTCTGTTTCTTATCAACTTATGCTTCTAAAATATTGAATGTTTAGTG
001110AAOA999029HT (AAOA) Royal Gala phloem Malus domestica cDNA clone AAOA999029, mRNA sequence.
EB119163.1:395-415
GTGAAAGGCACTGAACGGTTCGCAAAATCG395GGCACTCTGTTTCTTATCAACTTGCTTCTAAAATATTGAATGTTTAGTGTA
001202AAOA004541HT (AAOA) Royal Gala phloem Malus domestica cDNA clone AAOA004541, mRNA sequence.
EB119533.1:59-79
GTGAAAGGCACTGAACGGTTCGCAAAATCG59GGCACTCTGTTTCTTATCAACTTATGCTTCTAAAATATTGAATGTTTAGTG
001204AAOA008076HT (AAOA) Royal Gala phloem Malus domestica cDNA clone AAOA008076, mRNA sequence.
EB120315.1:394-414
GTGAAAGGCACTGAACGGTTCGCAAAATCG394GGCACTCTGTTTCTTATCAACTTGCTTCTAAAATATTGAATGTTTAGTGTA
Mdltx7527B17.g1 Apple_EST_Mdltx Malus domestica cDNA 5' similar to emb|CAC84706.1| aux/IAA protein [Populus tremula x Populus tremuloides], mRNA sequence.
GO530134.1:516-536
GTGAAAGGCACTGAACGGTTCGCAAAATCG516GGCACTCTGTTTCTTATCAACTTATGCTTACTAAATATTGAATG
Pyrus pyrifolia mRNA, clone: NFR3_08_52, 5' end sequence, expressed in fruit.
HX751804.1:655-675
GTGAAGGGCACTGAACGGTTCGCAAAATCG655GGCACTCTGTTTCTTATCAACTTTTGCTTC
Pyrus pyrifolia mRNA, clone: NFR6_28_26, 5' end sequence, expressed in fruit.
HX760962.1:160-180
GTGAAGGGCACTGAACGGTTCGCAAAATCG160GGCACTCTGTTTCTTATCAACTTTTGCTTCTAAAATATTGAATATTTAGTG
TSA: Pyrus pyrifolia mRNA, contig: contig_4126.
FX394992.1:376-396
GTGAAGGGCACTGAACGGTTCGCAAAATCG376GGCACTCTGTTTCTTATCAACTTTTGCTTCTAAAATATTGAATATTTAGTG
TSA: Pyrus communis mRNA, contig: lc1368.
FX609955.1:510-530
GTGAAGGGCACTGAACGGTTCGCAAAATCG510GGCACTCTGTTTCTTATCAACTTGTGCTTCTAAAATATTGAATATTTAGTG
TSA: Pyrus communis mRNA, contig: lc22235.
FX630709.1:223-243
GTGAAGGGCACTGAACGGTTCGCAAAATCG223GGCACTCTGTTTCTTATCAACTTGTGCTTCTAAAATATTGAATATTTAGTG
Malus x domestica ARF domain class transcription factor (IAA12) mRNA, complete cds.
HM122442.1:1188-1208
GTGAAAGGCACTGAACGGTTCGCAAAATCG1188GGCACTCTGTTTCTTATCAACTTATGCTTCTAAAATATTGAATGTTTAGTG
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141954.1:3865060-3865080
GTGAAAGGCACCGAACGGTTCGCAAAATCG3865060GGCACTCTGTTTCTTATCAACTTATGCTTCTAAAATATTGAATGTTTAGTG
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141971.1:4240162-4240182
GTGAAAGGCACTGAACGGTTCGCAAAATCG4240162GGCACTCTGTTTCTTATCAACTTATGCTTCTAAAATATTGAATGTTTAGTG
Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143359.1:4230428-4230448
GTGAAAGGCACTGAACGGTTCGCAAAATCG4230428GGCACTCTGTTTCTTATCAACTTATGCTTCTAAAATATTGAATGTTTAGTG
Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143376.1:4180070-4180090
GTGAAAGGCACTGAACGGTTCGCAAAATCG4180070GGCACTCTGTTTCTTATCAACTTATGCTTCTAAAATATTGAATGTTTAGTG
Malus sylvestris genome assembly, chromosome: 2.
OU696504.1:4385327-4385347
GTGAAAGGCACTGAACGGTTCGCAAAATCG4385327GGCACTCTGTTTCTTATCAACTTATGCTTCTAAAATATTGAATGTTTAGTG
Malus domestica genome assembly, chromosome: 2.
OU696678.1:4230335-4230355
GTGAAAGGCACTGAACGGTTCGCAAAATCG4230335GGCACTCTGTTTCTTATCAACTTATGCTTCTAAAATATTGAATGTTTAGTG
Malus domestica genome assembly, chromosome: 2.
OU744543.1:4462374-4462394
GTGAAAGGCACTGAACGGTTCGCAAAATCG4462374GGCACTCTGTTTCTTATCAACTTATGCTTCTAAAATATTGAATGTTTAGTG
Malus domestica genome assembly, chromosome: 2.
OU744954.1:4257110-4257130
GTGAAAGGCACTGAACGGTTCGCAAAATCG4257110GGCACTCTGTTTCTTATCAACTTATGCTTCTAAAATATTGAATGTTTAGTG
Malus domestica genome assembly, chromosome: 2.
OU744992.1:4230278-4230298
GTGAAAGGCACTGAACGGTTCGCAAAATCG4230278GGCACTCTGTTTCTTATCAACTTATGCTTCTAAAATATTGAATGTTTAGTG
Pyrus communis genome assembly, chromosome: 10.
OY757077.1:3172279-3172299
GTGAAGGGCACTGAACGGTTCGCAAAATCG3172279GGCACTCTGTTTCTTATCAACTTGTGCTTCTAAAATATTGAATATTTAGTG
Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH017_03677m, 5' end sequence.
AB450702.1:216-236
CACTAAATATTCAATATTTTANAAGCAAAA216GTTGATAAGAAACAGAGTGCCCGATTTTGCGAACCGTTCAGTGCCCTTCAC
Mdfrt3056O01_e10010.g1 Mdfrt Malus domestica cDNA 5', mRNA sequence.
GO550626.1:222-242
CACTAAACATTCAATATTTTAGAAGCATAA222GTTGATAAGAAACAGAGTGCCCGATTTTGCGAACCGTTCAGTGCCTTTCAC
Mdstw6032M18_e32750.g1 Apple_EST_Mdstw Malus domestica cDNA 5' similar to emb|CAC84706.1| aux/IAA protein [Populus tremula x Populus tremuloides], mRNA sequence.
GO554966.1:95-115
CACTAAACATTCAATATTTTAGAAGCATAA95GTTGATAAGAAACAGAGTGCCCGATTTTGCGAACCGTTCAGTGCCTTTCAC
Pyrus pyrifolia mRNA, clone: NFR2_06_77, 5' end sequence, expressed in fruit.
HX748819.1:77-97
CACTAAATATTCAATATTTTNNNAGCAAAA77GTTGATAAGAAACAGAGTGCCCGATTTTGCGAACCGTTCNGNGCCCTTCAC
TSA: Pyrus x bretschneideri Unigene1448_XinShao mRNA sequence.
JR596817.1:127-147
CACTAAATATTCAATATTTTAGAAGCATAA127GTTGATAAGAAACAGAGTGCCCGATTTTGCGAACCGTTCAGTGCCCTTCAC
Malus hybrid cultivar cultivar Flame chromosome 2.
CP141911.1:31826916-31826936
CACTAAACATTCAATATTTTAGAAGCATAA31826916GTTGATAAGAAACAGAGTGCCCGATTTTGCGAACCGTTCAGTGCCTTTCAC
Malus hybrid cultivar cultivar Flame chromosome 2.
CP141928.1:34123341-34123361
CACTAAACATTCAATATTTTAGAAGCATAA34123341GTTGATAAGAAACAGAGTGCCCGATTTTGCGAACCGTTCAGTGCCTTTCAC
Malus x robusta genome assembly, chromosome: 7.
OY720331.1:32845830-32845850
CACTAAACATTCAATATTTTAGAAGCATAA32845830GTTGATAAGAAACAGAGTGCCCGATTTTGCGAACCGTTCAGTGCCTTTCAC
Crataegus laevigata genome assembly, chromosome: 5.
OY756942.1:36688040-36688060
CACTAAATATTCAATATCTTAGAAGCGTAT36688040GTTGATAAGAAACAGAGTGCCCGATTTTGCAAACCGTTCAGTCCCTTTGAC
Crataegus laevigata genome assembly, chromosome: 7.
OY756944.1:24603819-24603839
CACTAAATATTCAATATTTTAGAAGCATAA24603819GTTGATAAGAAACAGAGTGCCCGATTTTGGAACCGTTCAGTGCTTTCACCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGCACTCTGTTTCTTATCAAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGCACTCTGTTTCTTATCAAC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.720 | 0.712 | search_plus_done; http://172.18.8.135:50400/match?q=GGCACTCTGTTTCTTATCAAC&k=0&no_gap=0&offset=0&limit=50
1.013 | 0.292 | search_minus_done; http://172.18.8.135:50400/match?q=GTTGATAAGAAACAGAGTGCC&k=0&no_gap=0&offset=0&limit=24
1.019 | 0.006 | cgi_end;

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