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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 20:35:16, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KR 1020110020307-A/1: Genetically modified plant capable of biosynthesizing capsinoid.
DI222078.1:1204-1224
CATAATTGGGGAGATAAGGGGAACTGGTTT1204GGCACTTTCTACAGAGTTTGTGAACAATAAATCTCCTAATGATCCCTTTCC
WO 2009157376-A/1: Capsinoid Biosynthesizing Genetically Modified Plants.
FV528570.1:1204-1224
CATAATTGGGGAGATAAGGGGAACTGGTTT1204GGCACTTTCTACAGAGTTTGTGAACAATAAATCTCCTAATGATCCCTTTCC
JP 2010000067-A/1: A screening method for a plant that biosynthesizes a capsinoid.
FW298733.1:1128-1148
CATAATTGGGGAGATAAGGGGAACTGGTTT1128GGCACTTTCTACAGAGTTTGTGAACAATAAATCTCCTAATGATCCCTTTCC
JP 2010000067-A/12: A screening method for a plant that biosynthesizes a capsinoid.
FW298744.1:1-21
1GGCACTTTCTACAGAGTTTGTGAA
Sequence 1 from patent US 9340795.
HL818863.1:1204-1224
CATAATTGGGGAGATAAGGGGAACTGGTTT1204GGCACTTTCTACAGAGTTTGTGAACAATAAATCTCCTAATGATCCCTTTCC
TSA: Capsicum annuum MGMT_Contig28248, mRNA sequence.
JW078492.1:1229-1249
CATAATTGGGGAGATAAGGGGAACTGGTTT1229GGCACTTTCTACAGAGTTTGTGAACAATAAATCTCCTAATGATCCCTTTCC
Capsicum chinense strain habanero putative aminotransferase mRNA, complete cds.
AF085149.1:1204-1224
CATAATTGGGGAGATAAGGGGAACTGGTTT1204GGCACTTTCTACAGAGTTTGTAGACAATAAATCTCCTAATGATCCCTTTCC
Capsicum annuum cultivar Yidu-Red putative aminotransferase mRNA, complete cds.
HM991733.1:1128-1148
CATAATTGGGGAGATAAGGGGAACTGGTTT1128GGCACTTTCTACAGAGTTTGTGAACAATAAATCTCCTAATGATCCCTTTCC
Capsicum chinense pAMT gene for putative aminotransferase, complete cds, cultivar: habanero.
LC032106.1:9110-9130
TTTTTTAATAAAGATAAGGGGAACTGGTTT9110GGCACTTTCTACAGAGTTTGTAGACAATAAATCTCCTAATGATCCCTTTCC
Capsicum chinense DNA, pAMT (putative aminotransferase) gene contains 5bp insertion in 8th exon, complete sequence, cultivar: Belize Sweet.
LC032107.1:9114-9134
TTTTTTAATAAAGATAAGGGGAACTGGTTT9114GGCACTTTCTACAGAGTTTGTAGACAATAAATCTCCTAATGATCCCTTTCC
Capsicum chinense DNA, pAMT (putative aminotransferase) gene contains insertion before 6th exon, complete sequence, cultivar: Zavory Hot.
LC032108.1:11408-11428
TTTTTTAATAAAGATAAGGGGAACTGGTTT11408GGCACTTTCTACAGAGTTTGTAGACAATAAATCTCCTAATGATCCCTTTCC
Capsicum chinense DNA, pAMT (putative aminotransferase) gene contains 8bp insertion in 6th exon, complete sequence, cultivar: Aji Dulce strain2.
LC032109.1:11742-11762
TTTTTTAATAAAGATAAGGGGAACTGGTTT11742GGCACTTTCTACAGAGTTTGTAGACAATAAATCTCCTAATGATCCCTTTCC
Capsicum chinense DNA, pAMT (putative aminotransferase) gene contains 2.8 kb insertion in 2nd exon, complete sequence, cultivar: LP6.
LC032110.1:11939-11959
TTTTTTAATAAAGATAAGGGGAACTGGTTT11939GGCACTTTCTACAGAGTTTGTAGACAATAAATCTCCTAATGATCCCTTTCC
Capsicum chinense pAMT gene, complete sequence, strain: No.4034.
LC273300.1:9111-9131
TTTTTTAATAAAGATAAGGGGAACTGGTTT9111GGCACTTTCTACAGAGTTTGTAGACAATAAATCTCCTAATGATCCCTTTCC
Capsicum annuum Color Piman Yellow pAMT mRNA for putative aminotransferase, complete cds.
LC423554.1:1128-1148
CATAATTGGGGAGATAAGGGGAACTGGTTT1128GGCACTTTCTACAGAGTTTGTGAACAATAAATCTCCTAATGATCCCTTTCC
Capsicum chinense Devil's Yellow pAMT gene for putative aminotransferase, complete cds.
LC483648.1:13692-13712
TTTTTTAATAAAGATAAGGGGAACTGGTTT13692GGCACTTTCTACAGAGTTTGTAGACAATAAATCTCCTAATGATCCCTTTCC
Capsicum chinense LP13 pAMT gene for putative aminotransferase, complete cds.
LC483649.1:13728-13748
TTTTTTAATAAAGATAAGGGGAACTGGTTT13728GGCACTTTCTACAGAGTTTGTAGACAATAAATCTCCTAATGATCCCTTTCC
Capsicum annuum cv. CH-19 sweet pAMT mRNA for putative aminotransferase, complete cds.
LC744758.1:1128-1148
CATAATTGGGGAGATAAGGGGAACTGGTTT1128GGCACTTTCTACAGAGTTTGTGAACAATAAATCTCCTAATGATCCCTTTCC
Capsicum annuum cv. Yume-matsuri pAMT mRNA for putative aminotransferase, complete cds.
LC744759.1:1128-1148
CATAATTGGGGAGATAAGGGGAACTGGTTT1128GGCACTTTCTACAGAGTTTGTGAACAATAAATCTCCTAATGATCCCTTTCC
Capsicum baccatum cv. Super pAMT mRNA for putative aminotransferase, complete cds.
LC744760.1:1128-1148
CATAATTGGGGAGATAAGGGGAACTGGTTT1128GGCACTTTCTACAGAGTTTGTAGACAATAAATCTCCTAATGATCCCTTTCC
KS15060A01 KS15 Capsicum annuum cDNA, mRNA sequence.
GD069000.1:393-413
GGAAAGGGATCATTAGGAGATTTATTGTTC393ACAAACTCTGTAGAAAGTGCCAAACCAGTTCCCCTTATCTCCCCAATTATG
TSA: Capsicum annuum CM_MegaContig_13621 mRNA sequence.
JW101124.1:478-498
GGAAAGGGATCATTAGGAGATTTATTGTCT478ACAAACTCTGTAGAAAGTGCCAAACCAGTTCCCCTTATCTCCCCAATTATG
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 3.
CP124729.1:253852905-253852925
GGAAAGGGATCATTAGGAGATTTATTGTTC253852905ACAAACTCTGTAGAAAGTGCCAAACCAGTTCCCCTTATCTTTATTTAAAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGCACTTTCTACAGAGTTTGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGCACTTTCTACAGAGTTTGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.279 | 0.270 | search_plus_done; http://172.18.8.135:50400/match?q=GGCACTTTCTACAGAGTTTGT&k=0&no_gap=0&offset=0&limit=50
0.416 | 0.137 | search_minus_done; http://172.18.8.135:50400/match?q=ACAAACTCTGTAGAAAGTGCC&k=0&no_gap=0&offset=0&limit=30
0.418 | 0.002 | cgi_end;

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