GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 09:34:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Musa acuminata subsp. malaccensis isolate AA chromosome 8.
CP126377.1:35144065-35144084
TCTTTAAAAGTGCTATTCCACATGCTTCAT35144065GGCAGAAACACTTCGCCTACTTGATTACAAGCAAACAAACAAACCGGAGC
Musa acuminata subsp. malaccensis isolate AA chromosome 19.
CP126388.1:34953663-34953682
TCTTTAAAAGTGCTATTCCACATGCTTCAT34953663GGCAGAAACACTTCGCCTACTTGATTACAAGCAAACAAACAAACCGGAGC
Musa schizocarpa genome assembly, chromosome: S08.
LS990922.1:38587421-38587440
TCTTTATAAGTGCTATTCCACATGCTTCAT38587421GGCAGAAACACTTCGCCTACTTGATTACAAGCAAACAAACAAACCGGAGC
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A08.
HG996472.1:32369389-32369408
GCTCCGGTTTGTTTGTTTGCTTGTAATCAA32369389GTAGGCGAAGTGTTTCTGCCATGAAGCATGTGGAATAGCACTTTTAAAGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGCAGAAACACTTCGCCTAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGCAGAAACACTTCGCCTAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.315 | 0.307 | search_plus_done; http://172.18.8.135:50400/match?q=GGCAGAAACACTTCGCCTAC&k=0&no_gap=0&offset=0&limit=50
0.401 | 0.086 | search_minus_done; http://172.18.8.135:50400/match?q=GTAGGCGAAGTGTTTCTGCC&k=0&no_gap=0&offset=0&limit=47
0.402 | 0.001 | cgi_end;

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