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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:49:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Homo sapiens chromosome 17, clone RP11-498C9, complete sequence.
AC145207.2:102249-102267
TGGGCTGAGAGTAGGAACTGGCCAGCCCCG102249GGCAGGAGAGGCAGCATTCCTGTGGGACTTGGAGCTCTTCCAGGGTGGC
Homo sapiens cDNA clone IMAGE:4079668, partial cds.
BC014216.2:774-792
TGGGCTGAGAGTAGGAACTGGCCAGCCCCG774GGCAGGAGAGGCAGCATTCCTGTGGGACTTGGAGCTCTTCCAGGGTGGC
Human DNA sequence from clone ABC8-5698349H15 on chromosome 20.
FP929141.6:5959-5977
TGGGCTGAGAGTAGGAACTGGCCAGCCCCG5959GGCAGGAGAGGCAGCATTCCTGTGGGACTTGGAGCTCTTCCAGGGTGGC
Ovis canadensis canadensis isolate 43U chromosome 3 sequence.
CP011888.1:193524962-193524980
ATGAAGAGAAACTTCGTTTGTATCTAATTC193524962GGCAGGAGAGGCAGCATTCATTCTTCGGATTCTGCTCAACTGCTCAAAA
Capricornis sumatraensis isolate serow.1 chromosome 4.
CP135629.1:132488884-132488902
TGAAGAGAAACTTCGTTTGTATTTCAGTTC132488884GGCAGGAGAGGCAGCATTCAATTCTTCGGATTCTGCTCAACTGCTCAAA
Myotis daubentonii genome assembly, chromosome: 1.
OY725359.1:40209012-40209030
AAGAAGTGTTACTGAGAAGGGAGAAGGGAA40209012GGCAGGAGAGGCAGCATTCCTTTCCCTCCCTCCCTCCCTCCCTCCCTCC
Rhinatrema bivittatum genome assembly, chromosome: 1.
LR584387.1:695282467-695282485
TCAGCACCTAGCAAGTAGAAATGGCTTGGT695282467GGCAGGAGAGGCAGCATTCAGCATCGCAGCGGTCAGCTGTTTTTTTTTT
Caprimulgus europaeus genome assembly, chromosome: 5.
OU015528.1:50490079-50490097
GGCAGACTGAGTCTGTCCAGGGAACAGGAG50490079GGCAGGAGAGGCAGCATTCCTCATCAGGAAAAAGGAAGAGGGAGATTTG
Vipera ursinii genome assembly, chromosome: 8.
OX365973.1:6010617-6010635
AGCTTTTACCACTGAATCCAGAAAGCCTTG6010617GGCAGGAGAGGCAGCATTCATCTCCCTCCCTTGTGATAGGCAGCCAAAT
Podarcis cretensis genome assembly, chromosome: 13.
OX638161.1:38747401-38747419
AGCAAGAAGCAGTTGCTTTGGAGCACAAAT38747401GGCAGGAGAGGCAGCATTCTAGTACAAATCTCAATAAAAGAAAATATCT
Sequence 13291 from Patent WO2016022021.
LP658856.1:5390-5408
TTAATCGGCGTGGTTGGTTCCGAGAACTCC5390GGCAGGAGAGGCAGCATTCGTGGCCGCGGCCTTTTATCCCGGCACTCCC
Sequence 13295 from Patent WO2016022021.
LP658860.1:9493272-9493290
TTAATCGGCGTGGTTGGTTCCGAGAACTCC9493272GGCAGGAGAGGCAGCATTCGTGGCCGCGGCCTTTTATCCCGGCACTCCC
Sequence 2526 from patent US 10900036.
MX303220.1:1877-1895
TGGGCTGAGAGTAGGAACTGGCCAGCCCCG1877GGCAGGAGAGGCAGCATTCCTGTGGGACTTGGAGCTCTTCCAGGGTGGC
Homo sapiens chromosome UL clone RP11-498C9, WORKING DRAFT SEQUENCE, 16 unordered pieces.
AC069004.2:105636-105654
TGGGCTGAGAGTAGGAACTGGCCAGCCCCG105636GGCAGGAGAGGCAGCATTCCTGTGGGACTTGGAGCTCTTCCAGGGTGGC
Chloroclysta siterata genome assembly, chromosome: 8.
OW028595.1:21126194-21126212
AGAAAACTACCTTCATCATCGACGATCTTA21126194GGCAGGAGAGGCAGCATTCATCATCATCAAGCTAATTTTAAAAATTAAT
Homo sapiens DNA, chromosome 17, nearly complete genome.
AP023477.1:79342536-79342554
GCCACCCTGGAAGAGCTCCAAGTCCCACAG79342536GAATGCTGCCTCTCCTGCCCGGGGCTGGCCAGTTCCTACTCTCAGCCCA
Homo sapiens isolate CHM13 chromosome 17.
CP068261.2:82751875-82751893
GCCACCCTGGAAGAGCTCCAAGTCCCACAG82751875GAATGCTGCCTCTCCTGCCCGGGGCTGGCCAGTTCCTACTCTCAGCCCA
Homo sapiens isolate NA24385 chromosome 17.
CP139526.1:82386143-82386161
GCCACCCTGGAAGAGCTCCAAGTCCCACAG82386143GAATGCTGCCTCTCCTGCCCGGGGCTGGCCAGTTCCTACTCTCAGCCCA
Homo sapiens isolate NA24385 chromosome 17.
CP139549.1:83456896-83456914
GCCACCCTGGAAGAGCTCCAAGTCCCACAG83456896GAATGCTGCCTCTCCTGCCCGGGGCTGGCCAGTTCCTACTCTCAGCCCA
Vipera ursinii genome assembly, chromosome: 14.
OX365979.1:6275876-6275894
TCTGAGCTGAGTTGCCTCTTAAATCCTCTG6275876GAATGCTGCCTCTCCTGCCTGGGAATCCAGACTACATGCCGTCAGAGAT
Sequence 668 from patent US 10233495.
MM797611.1:227715-227733
GCCACCCTGGAAGAGCTCCAAGTCCCACAG227715GAATGCTGCCTCTCCTGCCCGGGGCTGGCCAGTTCCTACTCTCAGCCCA
Sequence 669 from patent US 10233495.
MM797612.1:82566-82584
GCCACCCTGGAAGAGCTCCAAGTCCCACAG82566GAATGCTGCCTCTCCTGCCCGGGGCTGGCCAGTTCCTACTCTCAGCCCA
Sequence 670 from patent US 10233495.
MM797613.1:69377-69395
GCCACCCTGGAAGAGCTCCAAGTCCCACAG69377GAATGCTGCCTCTCCTGCCCGGGGCTGGCCAGTTCCTACTCTCAGCCCA
Sequence 2 from patent US 10407724.
MO365461.1:481615-481633
GCCACCCTGGAAGAGCTCCAAGTCCCACAG481615GAATGCTGCCTCTCCTGCCCGGGGCTGGCCAGTTCCTACTCTCAGCCCA
Sequence 2 from patent US 11174516.
MY705816.1:481615-481633
GCCACCCTGGAAGAGCTCCAAGTCCCACAG481615GAATGCTGCCTCTCCTGCCCGGGGCTGGCCAGTTCCTACTCTCAGCCCA
Eukaryotic synthetic construct chromosome 17.
CP034495.1:79842589-79842607
GCCACCCTGGAAGAGCTCCAAGTCCCACAG79842589GAATGCTGCCTCTCCTGCCCGGGGCTGGCCAGTTCCTACTCTCAGCCCA
Eukaryotic synthetic construct chromosome 17.
CP034520.1:79842589-79842607
GCCACCCTGGAAGAGCTCCAAGTCCCACAG79842589GAATGCTGCCTCTCCTGCCCGGGGCTGGCCAGTTCCTACTCTCAGCCCA
Elaeis guineensis EST, clone (6lib)_isotig34868.
LM630209.1:94-112
CCGCCGCTGGGGAATGGCTAAGGTCCACCC94GAATGCTGCCTCTCCTGCCCTCGAGCTCCCGAGGCCTGCCGTCTCTTGC
TSA: Nothofagus nervosa isotig00556 mRNA sequence.
JT782116.1:1303-1321
CTCCTACAAAGAAGCTGCATGCTCCAAACA1303GAATGCTGCCTCTCCTGCCATATGTTCTGGTCATGTAGGAAGCTCCATA
Macaca fuscata fuscata DNA, clone: MSB2-006F12_F, genomic survey sequence.
AG615814.1:105-123
ACGACGTCCGCGGAGCTCCAAGTCCCACAG105GAATGCTGCCTCTCCTGCCTGGGGCTGGCCAGTTCCTACTCTCAACCCA
Elaeis guineensis microsatellite DNA, clone mEgCIR0465.
AJ271940.1:369-387
CCGCCGCTGGGGAATGGCTAAGGTCCACCC369GAATGCTGCCTCTCCTGCCCTCGAGCTCCCGAGGCCTGCCGCCTCTTGC
Geranium rotundifolium genome assembly, chromosome: 12.
OY987322.1:2962238-2962256
CTCCTAGAAAGAAGCTGACCGCTCCCACGA2962238GAATGCTGCCTCTCCTGCCATAGCTTCGTGTCACATAGGAAGCTCCAAA
Pasiphila rectangulata genome assembly, chromosome: 7.
OY720242.1:19801851-19801869
CCCTCAATGCGCTGTGGGTCGCCGGGAGTA19801851GAATGCTGCCTCTCCTGCCCGTAGATGCAGTAAGAATCTGCCGAGGGAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GGCAGGAGAGGCAGCATTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GGCAGGAGAGGCAGCATTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.320 | 0.311 | search_plus_done; http://172.18.8.135:50400/match?q=GGCAGGAGAGGCAGCATTC&k=0&no_gap=0&offset=0&limit=50
0.831 | 0.511 | search_minus_done; http://172.18.8.135:50400/match?q=GAATGCTGCCTCTCCTGCC&k=0&no_gap=0&offset=0&limit=35
0.843 | 0.012 | cgi_end;

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