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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-09 14:27:47, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

GA__Ed0032G10r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0032G10r, mRNA sequence.
BQ410635.1:186-205
TAATAATCATGTATTCATATGTATAGCAAT186GGCATATTTCCGATGCCTTATGATTATAAAAAAGAATTTAGTGTAATGGA
GR__Eb0028C09.f GR__Eb Gossypium raimondii cDNA clone GR__Eb0028C09 5', mRNA sequence.
CO101609.1:50-69
TAATAATCATGTATTCATATGTATAGCAAT50GGCATATTTCCGATGCCTTATGATTATAAAAAAGAATTTAGTGTAATGGA
GR__Eb0031D23.f GR__Eb Gossypium raimondii cDNA clone GR__Eb0031D23 5', mRNA sequence.
CO103213.1:42-61
TAATAATCATGTATTCATATGTATAGCAAT42GGCATATTTCCGATGCCTTATGATTATAAAAAAGAATTTAGTGTAATGGA
GR__Eb31D23.f GR__Eb Gossypium raimondii cDNA clone GR__Eb31D23 5', mRNA sequence.
CO129819.1:42-61
TAATAATCATGTATTCATATGTATAGCAAT42GGCATATTTCCGATGCCTTATGATTATAAAAAAGAATTTAGTGTAATGGA
G.h.fbr-sw06707 G.h.fbr-sw Gossypium hirsutum cDNA, mRNA sequence.
CO497317.1:116-135
TAATAATCATGTATTCATATGTATAGCAAT116GGCATATTTCCGATGCCTTATGATTATAAAAAAGAATTTAGTGTAATGGA
COT_DT_E11 Fiber and Ovule of Xu-142 Lambda Zap Express Library Gossypium hirsutum cDNA 3' similar to (NM_104028) ABC transporter family protein; protein id: At1g51500.1, mRNA sequence.
DT049972.1:159-178
TAATAATCATGTATTCATATGTATAGCAAT159GGCATATTTCCGATGCCTTATGATTATAAAAAAGAATTTAGTGTAATGGA
H06_427262.90.S1104123241.anther-SP12186 Normalized cDNA library of anther of upland cotton cultivar CCRI36 Gossypium hirsutum cDNA 3', mRNA sequence.
JK703818.1:153-172
TAATAATCATGTATTCATATGTATAGCAAT153GGCATATTTCCGATGCCTTATGATTATAAAAAAGAATTTAGTGTAATGGA
B03_51707.15.S1108263237.LDYN1-10287.M13-R.ab1 Gossypium hirsutum L. cotton leaves cDNA library Gossypium hirsutum cDNA 3', mRNA sequence.
JZ111597.1:122-141
TAATAATCATGTATTCATATGTATAGCAAT122GGCATATTTCCGATGCCTTATGATTATAAAAAAGAATTTAGTGTAATGGA
C09_51672.33.S1108253424.LDYN1-8961.M13-R.ab1 Gossypium hirsutum L. cotton leaves cDNA library Gossypium hirsutum cDNA 3', mRNA sequence.
JZ113412.1:165-184
TAATAATCATGTATTCATATGTATAGCAAT165GGCATATTTCCGATGCCTTATGATTATAAAAAAGAATTTAGTGTAATGGA
G10_51671.82.S1108253281.LDYN1-8818.M13-R.ab1 Gossypium hirsutum L. cotton leaves cDNA library Gossypium hirsutum cDNA 3', mRNA sequence.
JZ118331.1:153-172
TAATAATCATGTATTCATATGTATAGCAAT153GGCATATTTCCGATGCCTTATGATTATAAAAAAGAATTTAGTGTAATGGA
Gossypioides kirkii chromosome KI_05.
CP032247.1:4877611-4877630
TAATAATCATGTATTCATATGTATAGCAAT4877611GGCATATTTCCGATGCCTTATGATTATAAAAAAGAATTTAGTGTAATGGA
Gossypium raimondii isolate D5-4 chromosome D5_05.
CP032557.1:5307554-5307573
TAATAATCATGTATTCATATGTATAGCAAT5307554GGCATATTTCCGATGCCTTATGATTATAAAAAAGAATTTAGTGTAATGGA
Gossypium herbaceum isolate GPA1alz chromosome 5.
CP106702.1:6927440-6927459
TAATAATCATGTATTCATATGTATAGCAAT6927440GGCATATTTCCGATGCCTTATGATTATAAAAAAGAATTTAGTGTAATGGA
P2G08 Cotton fiber subtracted cDNA library Gossypium hirsutum cDNA, mRNA sequence.
CB350477.1:100-119
TCCATTACACTAAATTCTTTTTTATAATCA100TAAGGCATCGGAAATATGCCATTGCTATACATATGAATACATGATTATTA
P2G06 Cotton fiber subtracted cDNA library Gossypium hirsutum cDNA, mRNA sequence.
CB350528.1:287-306
TCCATTACACTAAATTCTTTTTTATAATCA287TAAGGCATCGGAAATATGCCATTGCTATACATATGAATACATGATTATTA
GH_TMIRS_076_H07_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW503714.1:390-409
TCCATTACACTAAATTCTTTTTTATTATCA390TAAGGCATCGGAAATATGCCATTGCTATACATATGAATACATGATTATTA
EST486 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 7-b11 5', mRNA sequence.
EE592884.1:292-311
TCCATTACACTAAATTCTTTTTTATAATCA292TAAGGCATCGGAAATATGCCATTGCTATACATATGAATACATGATTATTA
UFL_530_14 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES796448.1:58-77
TCCATTACACTAAATTCTTTTTTATAATCA58TAAGGCATCGGAAATATGCCATTGCTATACATATGAATACATGATTATTA
E05_F-21_036 Cotton 1-14 day post anthesis Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EX171627.1:184-203
TCCATTACACTAAATTCTTTTTTATAATCA184TAAGGCATCGGAAATATGCCATTGCTATACATATGAATACATGATTATTA
A06-GC8209 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK805012.1:514-533
TCCATTACACTAAATTCTTTTTTATAATCA514TAAGGCATCGGAAATATGCCATTGCTATACATATGAATACATGATTATTA
A06-GC9361 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK805752.1:466-485
TCCATTACACTAAATTCTTTTTTATAATCA466TAAGGCATCGGAAATATGCCATTGCTATACATATGAATACATGATTATTA
H01-GC7888 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK810353.1:386-405
TCCATTACACTAAATTCTTTTTTATAATCA386TAAGGCATCGGAAATATGCCATTGCTATACATATGAATACATGATTATTA
Gossypium turneri isolate D10-2 chromosome D10_05.
CP032575.1:55170224-55170243
TCCATTACACTAAATTCTTTTTTATAATCA55170224TAAGGCATCGGAAATATGCCATTGCTATACATATGAATACATGATTATTA
Gossypium herbaceum isolate Zhongcao1 chromosome 5.
CP106692.1:89555267-89555286
TCCATTACACTAAATTCTTTTTTATAATCA89555267TAAGGCATCGGAAATATGCCATTGCTATACATATGAATACATGATTATTA
Gossypium bickii isolate GPG1lz chromosome 13.
CP106709.1:144301436-144301455
TCCATTACACTAAATTCTTTTTTATAACCA144301436TAAGGCATCGGAAATATGCCATTGCTTTACATATGAATACATGATTATTA
Gossypium rotundifolium isolate GPK201 chromosome 13.
CP106734.1:191407717-191407736
TCCATTACACTAAATTCTTTTTTATAATCA191407717TAAGGCATCGGAAATATGCCATTGCTATACATATGAATACATGATTATTA

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