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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-20 19:03:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Scyliorhinus canicula genome assembly, chromosome: 18.
LR744047.1:126818904-126818921
AATCCAAACTGATGGCGACTGAAGGAACGT126818904GGCATCCTCCAGCAGAAGAGAAGAGAGGAGGTGCCAGCCCATGAATCC
Taurulus bubalis genome assembly, chromosome: 14.
OU342724.1:21467126-21467143
TGAGTAACACTTAGGAGGCTCCTGTTGCTC21467126GGCATCCTCCAGCAGAAGGAGGGGGGTCTGTGGTTTGACATTGTTGTT
Acrocephalus scirpaceus scirpaceus genome assembly, chromosome: 3.
OU383775.1:38125867-38125884
TGTTAAATATCTTGAACTGTATGCTCCACT38125867GGCATCCTCCAGCAGAAGGGTTTAGTAATAGCGAACTACAGGTTTGCT
Accipiter gentilis genome assembly, chromosome: 20.
OV839381.1:20081826-20081843
GATAAGATGTGGGCTTGACCTCACACAGAG20081826GGCATCCTCCAGCAGAAGAAGAAACCACCCTATTCAAGGAAGAGCAAA
Silurus aristotelis genome assembly, chromosome: 14.
OX327766.1:7019796-7019813
CCAGACCTGAAGCCTTTTGAGCACATGTGG7019796GGCATCCTCCAGCAGAAGATGGAGAAGCATCATGTGTCTAACATCTAG
Gobio gobio genome assembly, chromosome: 8.
OX442381.1:5062770-5062787
ATAAATAATAGTAGATTCACGATATAAAAC5062770GGCATCCTCCAGCAGAAGTGGATGGGCTGTAAACTGTGATCTGAACGA
Labrus mixtus genome assembly, chromosome: 10.
OY757293.1:21393451-21393468
GTCACTGGCACACGACGGTGTTTTCTCTCA21393451GGCATCCTCCAGCAGAAGACAACAGCTATCTTGGACCCTAAAGCGCAG
Larus fuscus genome assembly, chromosome: 2.
OZ010754.1:97391815-97391832
GATAAGATGTGGGCTTGACCTTACACTGAA97391815GGCATCCTCCAGCAGAAGAGAAAGCACCATATTCGAGGGAGAGCAAAG
Sequence 39708 from patent US 11078247.
MY257099.1:4489-4506
TCCCTCTCCTACGTCGCCAACCAGGAGCCC4489GGCATCCTCCAGCAGAAGAACGCCGTCCAGATCATCTCCTCCGCCCTC
MAG: Candidatus Bathyarchaeota archaeon isolate bin28 chromosome.
CP070759.1:1535153-1535170
ATGGGAGACAGAGTTGCCATTCTGAACGAG1535153GGCATCCTCCAGCAGAAGGGCTCTCCAGACGATATATATTTTCATCCA
Medicago truncatula EST MtBB02B02F1 : T3 end of clone MtBB02B02 of cDNA library MtBB from symbiotic root nodules of cultivar Jemalong of Medicago truncatula (barrel medic).
AL373662.1:293-310
AGCCACCACGAAAGGAATCACCGACGCATA293GGCATCCTCCAGCAGAAGATAACATCCATTTCTAAAGCATGAAAATAC
Medicago truncatula EST MtBB02B02R1 : T7 end of clone MtBB02B02 of cDNA library MtBB from symbiotic root nodules of cultivar Jemalong of Medicago truncatula (barrel medic).
AL373663.1:257-274
AGCCACCACGAAAGGAATCACCGACGCATA257GGCATCCTCCAGCAGAAGATAACATCCATTTCTAAAGCATGAAAATAC
Medicago truncatula EST MtBB46F06R1 : T7 end of clone MtBB46F06 of cDNA library MtBB from symbiotic root nodules of cultivar Jemalong of Medicago truncatula (barrel medic).
AL379658.1:212-229
AGCCCCCACGAAAGGAATCACCGACGCATA212GGCATCCTCCAGCAGAAGATAACATCCATTTCTAAAGCATGAAAATAC
Medicago truncatula EST MtBB50B12F1 : T3 end of clone MtBB50B12 of cDNA library MtBB from symbiotic root nodules of cultivar Jemalong of Medicago truncatula (barrel medic).
AL380066.1:301-318
AGCCACCACGAAAGGAATCACCGACGCATA301GGCATCCTCCAGCAGAAGATAACATCCATTTCTAAAGCATGAAAATAC
Medicago truncatula EST MtBB50B12R1 : T7 end of clone MtBB50B12 of cDNA library MtBB from symbiotic root nodules of cultivar Jemalong of Medicago truncatula (barrel medic).
AL380067.1:285-302
AGCCACCACGAAAGGAATCACCGACGCATA285GGCATCCTCCAGCAGAAGATAACATCCATTTCTAAAGCATGAAAATAC
Medicago truncatula EST MtBB51B05R1 : T7 end of clone MtBB51B05 of cDNA library MtBB from symbiotic root nodules of cultivar Jemalong of Medicago truncatula (barrel medic).
AL380219.1:66-83
AGCCCCCACGAAAGGAATCACCGACGCATA66GGCATCCTCCAGCAGAAGATAACATCCATTTCTAAAGCATGAAAATAC
EST482818 GVN Medicago truncatula cDNA clone pGVN-63D2 5' end, mRNA sequence.
BG581088.1:281-298
AGCCACCACGAAAGGAATCACCGACGCATA281GGCATCCTCCAGCAGAAGATAACATCCATTTCTAAAGCATGAAAATAC
MTNAK80TKM KVKC Medicago truncatula cDNA clone pKVKC-11G8, mRNA sequence.
BQ255437.1:316-333
AGCCACCACGAAAGGAATCACCGACGCATA316GGCATCCTCCAGCAGAAGATAACATCCATTTCTAAAGCATGAAAATAC
EST670117 MTUS Medicago truncatula cDNA clone MTUS-19G12, mRNA sequence.
CF069396.1:276-293
AGCCACCACGAAAGGAATCACCGACGCATA276GGCATCCTCCAGCAGAAGATAACATCCATTTCTAAAGCATGAAAATAC
TSA: Medicago truncatula Contig12659.Metrroot mRNA sequence.
JR368113.1:326-343
AGCCACCACGAAAGGAATCACCGACGCATA326GGCATCCTCCAGCAGAAGATAACATCCATTTCTAAAGCATGAAAATAC
TSA: Botryococcus braunii ConsensusfromContig43343, mRNA sequence.
KA124691.1:104-121
GAATACCAACTCAAGCTCTCCTGGCCGCAG104GGCATCCTCCAGCAGAAGACGACCGTCGTCATATTCCCTTATGAACAC
Medicago truncatula clone mth2-75d20, WORKING DRAFT SEQUENCE, 16 unordered pieces.
AC234024.5:35805-35822
AGCCACCACGAAAGGAATCACCGACGCATA35805GGCATCCTCCAGCAGAAGATAACATCCATTTCTAAAGCATGAAAATAC
Peltaster fructicola strain LNHT1506 chromosome 1.
CP051139.1:3863853-3863870
TGCTGACCCAATGTAGCAGCCAAAGGCCAA3863853GGCATCCTCCAGCAGAAGTTCTGCAAATAAGCCGACGACCGACGACGG
Cenchrus purpureus cultivar elephant grass chromosome B1.
CP053461.1:44481550-44481567
TAATCAGGCAGCAATGTTCAGTAAAGCAGT44481550GGCATCCTCCAGCAGAAGAATGTAACGACAAATTTCAGAAACTCATGA
Cenchrus americanus genome assembly, chromosome: PMC23DB1.
OX387239.1:95395390-95395407
TAATCAGGTGGCAAGGTTCAGTAAAGCAGT95395390GGCATCCTCCAGCAGAAGAATGTAACGACAAATTTCAGAAACTCGTGA
Vicia faba genome assembly, chromosome: 1S.
OX451735.1:1309662132-1309662149
TCACTCTCAAGCTTTTTGTGTGAGAACAAT1309662132GGCATCCTCCAGCAGAAGATGTAGCTGAAAGTTCTGAGAAGCTTCCTC
Medicago lupulina genome assembly, chromosome: 6.
OY283144.1:63085255-63085272
AGCCGCCACGCAAGGAACCACCGACGCATA63085255GGCATCCTCCAGCAGAAGATAACATCCATTTCTAAAGCATGAAAATAC
M.truncatula ENOD12 gene.
X68032.1:603-620
AGCCACCACGAAAGGAATCACCGACGCATA603GGCATCCTCCAGCAGAAGATAACATCCATTTCTAAAGCATGAAAATAC
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence.
CP000143.2:3111548-3111565
CTGCATCCCACCGACTACGAGCTGCGTCTG3111548GGCATCCTCCAGCAGAAGGCCGACTTCTACCGCGAGCAGTACCGCGGC
Cereibacter sphaeroides ATCC 17029 chromosome 1, complete sequence.
CP000577.1:10788-10805
CTGCATCCCACCGACTACGAGCTGCGTCTG10788GGCATCCTCCAGCAGAAGGCCGACTTCTACCGCGAGCAGTACCGCGGC
Rhodobacter sphaeroides KD131 chromosome 1, complete sequence.
CP001150.1:2785222-2785239
CTGCATCCCACCGACTACGAGCTGCGTCTG2785222GGCATCCTCCAGCAGAAGGCCGACTTCTACCGCGAGCAATACCGCGGC
Cereibacter sphaeroides strain MBTLJ-8 chromosome 1, complete sequence.
CP012960.1:3111066-3111083
CTGCATCCCACCGACTACGAGCTGCGTCTG3111066GGCATCCTCCAGCAGAAGGCCGACTTCTACCGCGAGCAGTACCGCGGC
Cereibacter sphaeroides strain MBTLJ-13 chromosome 1, complete sequence.
CP015210.1:3111565-3111582
CTGCATCCCACCGACTACGAGCTGCGTCTG3111565GGCATCCTCCAGCAGAAGGCCGACTTCTACCGCGAGCAGTACCGCGGC
Cereibacter sphaeroides strain MBTLJ-20 chromosome 1, complete sequence.
CP015287.1:3111540-3111557
CTGCATCCCACCGACTACGAGCTGCGTCTG3111540GGCATCCTCCAGCAGAAGGCCGACTTCTACCGCGAGCAGTACCGCGGC
Cereibacter sphaeroides 2.4.1 chromosome 1, complete sequence.
CP030271.1:3111554-3111571
CTGCATCCCACCGACTACGAGCTGCGTCTG3111554GGCATCCTCCAGCAGAAGGCCGACTTCTACCGCGAGCAGTACCGCGGC
Cereibacter sphaeroides strain AB24 chromosome 1.
CP033434.1:3168180-3168197
CTGCATCCCACCGACTACGAGCTGCGTCTG3168180GGCATCCTCCAGCAGAAGGCCGACTTCTACCGCGAGCAGTACCGCGGC
Haematobacter massiliensis strain OT1 chromosome, complete genome.
CP035510.1:171740-171757
GTCCACCCGACGGATTACGAACTGCGGCTC171740GGCATCCTCCAGCAGAAGACCGAGATCTATCAGGGCCGCTATGGCAAT
Cereibacter sphaeroides strain HJ chromosome 1, complete sequence.
CP036419.1:3185866-3185883
CTGCATCCCACCGACTACGAGCTGCGTCTG3185866GGCATCCTCCAGCAGAAGGCCGACTTCTACCGCGAGCAGTACCGCGGC
Cereibacter sphaeroides strain DSM 158 chromosome 1, complete sequence.
CP047031.1:3113299-3113316
CTGCATCCCACCGACTACGAGCTGCGTCTG3113299GGCATCCTCCAGCAGAAGGCCGACTTCTACCGCGAGCAGTACCGCGGC
Cereibacter sphaeroides strain 2.4.1 substr. H2 chromosome 1, complete sequence.
CP047037.1:3111073-3111090
CTGCATCCCACCGACTACGAGCTGCGTCTG3111073GGCATCCTCCAGCAGAAGGCCGACTTCTACCGCGAGCAGTACCGCGGC
Akkermansia massiliensis strain AkkB40 chromosome, complete genome.
CP072017.1:1079756-1079773
CCGGAAGCCGTCGTGGAACGCGAAGTGTAC1079756GGCATCCTCCAGCAGAAGATGCAGCAGGCCATGTACAGCGGGAACGCC
Candidatus Akkermansia timonensis isolate Akk0490 chromosome, complete genome.
CP072049.1:2245478-2245495
CCGGAAGCCGTCGTGGAACGGGAAGTGTAC2245478GGCATCCTCCAGCAGAAGCTCCAGCAGGCCATGTACAGCGGCAATCCC
Xanthomonas sacchari strain DD13 chromosome, complete genome.
CP100647.1:2288387-2288404
TGCCGGCTGCGCCACTGCCTGCAACTGTCC2288387GGCATCCTCCAGCAGAAGCGCGTAGCCGCGCGGGGAGGGCAGCCAGGA
Streptomyces sp. NBC_00257 chromosome, complete genome.
CP108082.1:269216-269233
TGCGGCAGGGCCGGGTCGGCCAGGGCCACC269216GGCATCCTCCAGCAGAAGCGCGAGGGCACCAGGCACAGGCCTCGTCCG
Streptomyces sp. NBC_00012 plasmid unnamed1, complete sequence.
CP108310.1:515435-515452
TGCGGCAGGGCCGGGTCGGCCAGGGCCACC515435GGCATCCTCCAGCAGAAGCGCGAGGGCACCAGGCACAGGCCCCGTCCG
Streptomycetaceae bacterium NBC_01309 chromosome, complete genome.
CP108400.1:5567675-5567692
GGCATCCGGGTCCAGGACCTCTTCGACCCC5567675GGCATCCTCCAGCAGAAGGTCGAGAGCGCGCTGCGCGACAAGAACCAG
Streptomyces sp. NBC_01244 chromosome, complete genome.
CP108488.1:972524-972541
ACGCCGCGCGTCGCTTTCCCGGCGGGCGGC972524GGCATCCTCCAGCAGAAGGCCGCCGAGGAGCAGGGCGCAGATGACGAG
Streptomyces sp. NBC_01005 chromosome, complete genome.
CP108703.1:431990-432007
TGCGGCAGGGCCGGGTCGGCCAGGGCCACC431990GGCATCCTCCAGCAGAAGCGCGAGGGCACCAGGCACAGGCCTCGTCCG
Streptomyces sp. NBC_00826 plasmid unnamed1, complete sequence.
CP108874.1:370470-370487
TGCGGCAGGGCCGGGTCGGCCAGGGCCACC370470GGCATCCTCCAGCAGAAGCGCGAGGGCACCAGGCACAGGCCTCGTCCG
Streptomyces sp. NBC_00825 chromosome, complete genome.
CP108876.1:211471-211488
TGCGGCAGGGCCGGGTCGGCCAGGGCCACC211471GGCATCCTCCAGCAGAAGCGCGAGGGCACCAGGCACAGGCCTCGTCCG
Streptomyces sp. NBC_00822 chromosome, complete genome.
CP108878.1:213339-213356
TGCGGCAGGGCCGGGTCGGCCAGGGCCACC213339GGCATCCTCCAGCAGAAGCGCGAGGGCACCAGGCACAGGCCTCGTCCG
Streptomyces sp. NBC_01650 chromosome, complete genome.
CP109258.1:428701-428718
TGCGGCAGGGCCGGGTCGGCCAGGGCCACC428701GGCATCCTCCAGCAGAAGCGCGAGGGCACCAGGCACAGGCCTCGTCCG
Streptomyces sp. NBC_01592 chromosome, complete genome.
CP109323.1:525220-525237
TGCGGCAGGGCCGGGTCGGCCAGGGCCACC525220GGCATCCTCCAGCAGAAGCGCGAGGGCACCAGGCACAGGCCTCGTCCG
Rhizobium sp. SSA_523 strain SSA5.23 chromosome, complete genome.
CP129382.1:826779-826796
GCCCGGCACGGCGCCCAGAAGCGCGCCCTC826779GGCATCCTCCAGCAGAAGGTGATGGGCAAGCCAGCCGGTGCGGGTGGT
Akkermansia sp. RCC_12PD chromosome, complete genome.
CP143889.1:915984-916001
CCGGAAGCCGTCGTGGAACGGGAAGTATAC915984GGCATCCTCCAGCAGAAGCTCCAGCAGGCCATGTACAGGGGAAATCCC
Macrobrachium nipponense isolate FS-2020 chromosome 34.
CP062047.1:31822534-31822551
CACGCCTGTCAACATCCTAGTAATCAGGGT31822534GGCATCCTCCAGCAGAAGAAAGTTTCCATGCAAACCATCATGACTCCC
Agrilus cyanescens genome assembly, chromosome: 1.
OX376705.1:13977423-13977440
TTCGGCCAGCAGATCCGGTTCGCTCTTAGT13977423GGCATCCTCCAGCAGAAGACTGTACACTTCATTATCTGCCACCTCCAG
Dioctria rufipes genome assembly, chromosome: 1.
OZ002740.1:59377125-59377142
AGCTTTGATGTCGCCCAACGCATTAGAGTT59377125GGCATCCTCCAGCAGAAGTGTTACAGACATTCTCTTAATATCATTGAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGCATCCTCCAGCAGAAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGCATCCTCCAGCAGAAG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.359 | 0.351 | search_plus_done; http://172.18.8.135:50400/match?q=GGCATCCTCCAGCAGAAG&k=0&no_gap=0&offset=0&limit=50
0.409 | 0.050 | search_minus_done; http://172.18.8.135:50400/match?q=CTTCTGCTGGAGGATGCC&k=0&no_gap=0&offset=0&limit=0
0.409 | 0.000 | cgi_end;

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