GGGenome | Results

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2025-04-09 14:44:12, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Arachis hypogaea DNA, clone: AHGS41B23.
DH961683.1:204-223

CCAAAAATTGGAACAGATATAGTAACATGC204GGCATGACAAAAATGATCCATATGCCATGGCACACTCTTCTACGTAACTC

Arachis hypogaea cultivar Shitouqi chromosome B01.
CP030993.1:1573430-1573449

CCAAAAATTGGAACAGATATAGTAACATGC1573430GGCATGACAAAAATGATCCATATGCCATGGCACACTCTTCTACGTAACTC

Arachis ipaensis cultivar K30076 chromosome 01.
CP049892.1:1527775-1527794

CCAAAAATTGGAACAGATATAGTAACATGC1527775GGCATGACAAAAATGATCCATATGCCATGGCACACTCTTCTACGTAACTC

Pyrausta despicata genome assembly, chromosome: 5.
OY992849.1:8752340-8752359

AAACTCTTACGATAGAAACGGCAAAGAAAT8752340GGCATGACAAAAATGATCCAGTAAGGTTAATAAGTTAAGGTAAGAATAAT

Arachis hypogaea cultivar Shitouqi chromosome A01.
CP030983.1:9243385-9243404

GAGTTACGTAGAAGAGTGTGCCATGGCATA9243385TGGATCATTTTTGTCATGCCGCATGTTACTATATCTGTTCCAATTTTTGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.126 | 0.118 | search_plus_done; http://172.18.8.135:50400/match?q=GGCATGACAAAAATGATCCA&k=0&no_gap=0&offset=0&limit=50
0.155 | 0.028 | search_minus_done; http://172.18.8.135:50400/match?q=TGGATCATTTTTGTCATGCC&k=0&no_gap=0&offset=0&limit=46
0.156 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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