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ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-03 12:55:30, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084K02, complete sequence.
AC189489.2:6364-6383
TGGACTAGTGGGTATTGAAACTTGAGATTT6364GGCATGTGTCAATGAGTTGGTTAGTCATTTGATTTCTAGCTTCTTAAAAA
Brassica napus genome assembly, chromosome: A07.
HG994361.1:24095509-24095528
TGGACTAGTGGGTATTGAAACTTGAGATTT24095509GGCATGTGTCAATGAGTTGGTTAGTCATTTGATTTCTAGCTTCTTAAAAA
Brassica rapa genome, scaffold: A07.
LR031574.1:23042262-23042281
TGGACTAGTGGGTATTGAAACTTGAGATTT23042262GGCATGTGTCAATGAGTTGGTTAGTCATTTGATTTCTAGCTTCTTAAAAA
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:23309110-23309129
TGGACTAGTGGGTATTGAAACTTGAGATTT23309110GGCATGTGTCAATGAGTTGGTTAGTCATTTGATTTCTAGCTTCTTAAAAA
Avena sativa genome assembly, chromosome: 3A.
OU342380.1:358939807-358939826
ACTACCATAGGCTGGACTTGTTTGGACAAG358939807GGCATGTGTCAATGAGTTGGACCCCATTTTGATTAGGGTTATAGGGTTTA
Avena atlantica genome assembly, chromosome: 3A.
OU342735.1:398079249-398079268
AGGCTAGGAAGTTGGACTTGTTTGGACAAG398079249GGCATGTGTCAATGAGTTGGACCCCATTTTGATTAGGGTTATAGGGTTTA
Avena longiglumis genome assembly, chromosome: 3A.
OU342749.1:410885363-410885382
AGGCTAGGAAGTTGGACTTGTTTGGACAAG410885363GGCATGTGTCAATGAGTTGGAGCCCATTTTGATTAGGGTTATAGGGTTTA
Avena sativa genome assembly, chromosome: 3.
OV702281.1:374872632-374872651
AGGCTAGGAAGTTGGACTTGTTTGGACAAG374872632GGCATGTGTCAATGAGTTGGACCCCATTTTGATTAGGGTTATAGGGTTTA
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:5343332-5343351
TTTTTAAGAAGCTAGAAATCAAATGACTAA5343332CCAACTCATTGACACATGCCAAATCTCAAGTTTCAATACCCACTAGTCCA
UNVERIFIED_CONTAM: Avena longiglumis isolate 447 chromosome 1.
CP125973.1:182197162-182197181
TAAACCCTATAACCCTAATCAAAATGGGGT182197162CCAACTCATTGACACATGCCCTTGTCCAAACAAGTCCAACTTCCTAGCCT
Alisma plantago-aquatica genome assembly, chromosome: 5.
OY856413.1:584145455-584145474
ACAAAGTTTTTGAATGGAGGTTGTTCCTGC584145455CCAACTCATTGACACATGCCAAAACCTCTTCAAAATTTTTAACAAACCCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GGCATGTGTCAATGAGTTGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GGCATGTGTCAATGAGTTGG | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.128 | 0.119 | search_plus_done; http://172.18.8.135:50400/match?q=GGCATGTGTCAATGAGTTGG&k=0&no_gap=0&offset=0&limit=50
0.163 | 0.035 | search_minus_done; http://172.18.8.135:50400/match?q=CCAACTCATTGACACATGCC&k=0&no_gap=0&offset=0&limit=42
0.165 | 0.002 | cgi_end;

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