GGGenome | Results

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2025-04-06 16:36:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 13.
CP141922.1:1845112-1845134

CGCTGATTTGGAGCTCTTGATCATAGGCGT1845112GGCCAAAGTGCATGAGATGTAGTTTCCCATTTGAGAGTCTAGAGAGAGAAAGT

Malus hybrid cultivar cultivar Flame chromosome 16.
CP141925.1:1924249-1924271

CGCTGACCTGGAGCTCTTGATCATCGGCGT1924249GGCCAAAGTGCATGAGATGTAGTTTCCCATTTGAAAGTCTAGAGAGAGAGAGA

Malus hybrid cultivar cultivar Flame chromosome 13.
CP141939.1:1901202-1901224

CGCTGATTTGGAGCTCTTGATCATAGGCGT1901202GGCCAAAGTGCATGAGATGTAGTTTCCCATTTGAGAGTCTAGAGAGAGAGAGA

Malus hybrid cultivar cultivar Flame chromosome 16.
CP141942.1:2166240-2166262

CGCTGACTTGGAGCTCTTGATCATCGGCGT2166240GGCCAAAGTGCATGAGATGTAGTTTCCCATTTGAAAGTCGAGAGAGAGAGAGA

Malus hybrid cultivar cultivar Royalty chromosome 16.
CP141968.1:2110700-2110722

CGCTGACTTGGAGCTCTTGATCATCGGCGT2110700GGCCAAAGTGCATGAGATGTAGTTTCCCATTTGAAAGTCGAGAGAGAGAGAGA

Malus hybrid cultivar cultivar Royalty chromosome 13.
CP141982.1:34741794-34741816

CGCTGATTTGGAGCTCTTGATCATAGGCGT34741794GGCCAAAGTGCATGAGATGTAGTTTCCCATTTGAGAGTCTAGAGAGAGAAAGT

Malus hybrid cultivar cultivar Royalty chromosome 16.
CP141985.1:2596113-2596135

CGCTGACTTGGAGCTCTTGATCATCGGCGT2596113GGCCAAAGTGCATGAGATGTAGTTTCCCATTTGAAAGTCGAGAGAGAGAGAGA

Malus hybrid cultivar cultivar SH6 chromosome 13.
CP143370.1:1925487-1925509

CGCTGATTTGGAGCTCTTGATCATAGGCGT1925487GGCCAAAGTGCATGAGATGTAGTTTCCCATTTGAGAGTCTAGAGAGAGAGAGA

Malus hybrid cultivar cultivar SH6 chromosome 16.
CP143373.1:2186790-2186812

CGCTGACTTGGAGCTCTTGATCATCGGCGT2186790GGCCAAAGTGCATGAGATGTAGTTTCCCATTTGAAAGTCTAGAGAGAGAGAGA

Malus hybrid cultivar cultivar SH6 chromosome 13.
CP143387.1:1878001-1878023

CGCTGATTTGGAGCTCTTGATCATAGGCGT1878001GGCCAAAGTGCATGAGATGTAGTTTCCCATTTGAGAGTCTAGAGAGAGAAAGA

Malus hybrid cultivar cultivar SH6 chromosome 16.
CP143390.1:1954421-1954443

CGCTGACTTGGAGCTCTTGATCATCGGCGT1954421GGCCAAAGTGCATGAGATGTAGTTTCCCATTTGAAAGTCTAGAGAGAGAGAGA

Malus sylvestris genome assembly, chromosome: 13.
OU696515.1:1910095-1910117

CGCTGATTTGGAGCTCTTGATCATAGGCGT1910095GGCCAAAGTGCATGAGATGTAGTTTCCCATTTGAGAGTCTAGAGAGAGAAAGT

Malus sylvestris genome assembly, chromosome: 16.
OU696518.1:2134652-2134674

CGCTGACTTGGAGCTCTTGATCATCGGCGT2134652GGCCAAAGTGCATGAGATGTAGTTTCCCATTTGAAAGTCGAGAGAGAGAGAGA

Malus domestica genome assembly, chromosome: 13.
OU696689.1:1954801-1954823

CGCTGATTTGGAGCTCTTGATCATAGGCGT1954801GGCCAAAGTGCATGAGATGTAGTTTCCCATTTGAGAGTCTAGAGAGAGAAAGT

Malus domestica genome assembly, chromosome: 16.
OU696692.1:2177218-2177240

CGCTGACTTGGAGCTCTTGATCATCGGCGT2177218GGCCAAAGTGCATGAGATGTAGTTTCCCATTTGAAAGTCGAGAGAGAGAGAGA

Malus domestica genome assembly, chromosome: 13.
OU744554.1:1959787-1959809

CGCTGATTTGGAGCTCTTGATCATAGGCGT1959787GGCCAAAGTGCATGAGATGTAGTTTCCCATTTGAGAGTCTAGAGAGAGAAAGT

Malus domestica genome assembly, chromosome: 16.
OU744557.1:2180361-2180383

CGCTGACTTGGAGCTCTTGATCATCGGCGT2180361GGCCAAAGTGCATGAGATGTAGTTTCCCATTTGAAAGTCGAGAGAGAGAGAGA

Malus domestica genome assembly, chromosome: 13.
OU744965.1:1921147-1921169

CGCTGATTTGGAGCTCTTGATCATAGGCGT1921147GGCCAAAGTGCATGAGATGTAGTTTCCCATTTGAGAGTCTAGAGAGAGAGAGA

Malus domestica genome assembly, chromosome: 16.
OU744968.1:2176816-2176838

CGCTGACTTGGAGCTCTTGATCATCGGCGT2176816GGCCAAAGTGCATGAGATGTAGTTTCCCATTTGAAAGTCGAGAGAGAGAGAGA

Malus domestica genome assembly, chromosome: 13.
OU745003.1:1878210-1878232

CGCTGATTTGGAGCTCTTGATCATAGGCGT1878210GGCCAAAGTGCATGAGATGTAGTTTCCCATTTGAGAGTCTAGAGAGAGAAAGT

Malus domestica genome assembly, chromosome: 16.
OU745006.1:2187452-2187474

CGCTGACTTGGAGCTCTTGATCATCGGCGT2187452GGCCAAAGTGCATGAGATGTAGTTTCCCATTTGAAAGTCGAGAGAGAGAGAGA

Malus x robusta genome assembly, chromosome: 3.
OY720327.1:2555790-2555812

CGCTGACTTGGAGCTCTTGATCATCGGCGT2555790GGCCAAAGTGCATGAGATGTAGTTTCCCATTTGAAAGTCGAGAGAGAGAGAGA

Malus x robusta genome assembly, chromosome: 9.
OY720333.1:1922540-1922562

CGCTGATTTGGAGCTCTTGATCATAGGCGT1922540GGCCAAAGTGCATGAGATGTAGTTTCCCATTTGAGAGTCTAGAGAGAGAAAGT

Crataegus laevigata genome assembly, chromosome: 3.
OY756940.1:2046457-2046479

CGCTGATTTGGAGCTCTTGATCATAGGCGT2046457GGCCAAAGTGCATGAGATGTAGTTTCCCATTTGAGAGAGAAAGTAAGAGAGAG

Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH022_05279m, 5' end sequence.
AB450705.1:88-110

TCTCTCTCTCTCTAGACTCTCAAATGGGAA88ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAATCAGCG

Mdfw2003m20.y1 Mdfw Malus domestica cDNA clone Mdfw2003m20 5', mRNA sequence.
CN445562.1:158-180

ACTTTCTCTCTCTAGACTCTCAAATGGGAA158ACTACATCTCATGCACTTTGGCCACGCCTATGATCAAGAGCTCCAAATCAGCG

Mdfw2025e21.y1 Mdfw Malus domestica cDNA clone Mdfw2025e21 5', mRNA sequence.
CN494452.1:82-104

ACTTTCTCTCTCTAGACTCTCAAATGGGAA82ACTACATCTCATGCACTTTGGCCACGCCTATGATCAAGAGCTCCAAATCAGCG

001116AAOA001105HT (AAOA) Royal Gala phloem Malus domestica cDNA clone AAOA001105, mRNA sequence.
CN868500.1:74-96

TCTCTCTCTCTCTCGACTTTCAAATGGGAA74ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG

001202AAOA005946HT (AAOA) Royal Gala phloem Malus domestica cDNA clone AAOA005946, mRNA sequence.
CN869239.1:61-83

TCTCTCTCTCTCTCGACTTTCAAATGGGAA61ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG

001202AAOA006077HT (AAOA) Royal Gala phloem Malus domestica cDNA clone AAOA006077, mRNA sequence.
CN869294.1:21-43

CTCGACTTTCAAATGGNGAA21ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG

001203AAOA004381HT (AAOA) Royal Gala phloem Malus domestica cDNA clone AAOA004381, mRNA sequence.
CN869541.1:51-73

TCTCTGTGTCTCTCGACTTTCAAATGGGAA51ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG

001203AAOA004610HT (AAOA) Royal Gala phloem Malus domestica cDNA clone AAOA004610, mRNA sequence.
CN869554.1:4-26

GAA4ACTACATCTCATGCACTTTGGCCACGCTCGTGATCAAGAGCTCCACGTCAGCG

001204AAOA007650HT (AAOA) Royal Gala phloem Malus domestica cDNA clone AAOA007650, mRNA sequence.
CN870484.1:72-94

TCTCTCTCTCTCTCGACTTTCAAATGGGAA72ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG

001204AAOA007747HT (AAOA) Royal Gala phloem Malus domestica cDNA clone AAOA007747, mRNA sequence.
CN870533.1:74-96

TCTCTCTCTCTCTCGACTTTCAAATGGGAA74ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG

010629AAZA006787HT (AAZA) M9 xylem Malus domestica cDNA clone AAZA006787, mRNA sequence.
CN896748.1:101-123

TACTTTCTCTCTCACACTCTCAAATGGGAA101ACTACATCTCATGCACTTTGGCCACGCCTATGATCAAAAGCTCCAAATCAGCG

010829ABCA001846HT (ABCA) Royal Gala fruit stored at 0.5 degrees C for 24 hours Malus domestica cDNA clone ABCA001846, mRNA sequence.
CN901824.1:63-85

TCTCTCTCTCTCTCGACTTTCAAATGGGAA63ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG

021014ABCA004674HT (ABCA) Royal Gala fruit stored at 0.5 degrees C for 24 hours Malus domestica cDNA clone ABCA004674, mRNA sequence.
CN902325.1:58-80

TCTCTCTCTCTCTCGACTTTCAAATGGGAA58ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG

021014ABCA005149HT (ABCA) Royal Gala fruit stored at 0.5 degrees C for 24 hours Malus domestica cDNA clone ABCA005149, mRNA sequence.
CN902514.1:72-94

TCTCTCTCTCTCTCGACTTTCAAATGGGAA72ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG

021014ABCA006046HT (ABCA) Royal Gala fruit stored at 0.5 degrees C for 24 hours Malus domestica cDNA clone ABCA006046, mRNA sequence.
CN902615.1:78-100

TCTCTCTCTCTCTCGACTTTCAAATGGGAA78ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG

021015ABCA002800HT (ABCA) Royal Gala fruit stored at 0.5 degrees C for 24 hours Malus domestica cDNA clone ABCA002800, mRNA sequence.
CN902772.1:74-96

TCTCTCTCTCTCTCGACTTTCAAATGGGAA74ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG

021015ABCA003173HT (ABCA) Royal Gala fruit stored at 0.5 degrees C for 24 hours Malus domestica cDNA clone ABCA003173, mRNA sequence.
CN902935.1:78-100

TCTCTCTCTCTCTCGACTTTCAAATGGGAA78ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG

021016ABCA003433HT (ABCA) Royal Gala fruit stored at 0.5 degrees C for 24 hours Malus domestica cDNA clone ABCA003433, mRNA sequence.
CN903065.1:64-86

TCTCTCTCTCTCTCGACTTTCAAATGGGAA64ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG

021016ABCA004387HT (ABCA) Royal Gala fruit stored at 0.5 degrees C for 24 hours Malus domestica cDNA clone ABCA004387, mRNA sequence.
CN903329.1:56-78

TCTCTCTCTCTCTCGACTTTCAAATGGGAA56ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG

021021ABCA005752HT (ABCA) Royal Gala fruit stored at 0.5 degrees C for 24 hours Malus domestica cDNA clone ABCA005752, mRNA sequence.
CN903774.1:62-84

TCTCTCTCTCTCTCGACTTTCAAATGGGAA62ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG

021021ABCA005843HT (ABCA) Royal Gala fruit stored at 0.5 degrees C for 24 hours Malus domestica cDNA clone ABCA005843, mRNA sequence.
CN903827.1:71-93

TCTCTCTCTCTCTCGACTTTCAAATGGGAA71ACTACATCTCATGCACTTTGGCCACGCCGATGATCAACAGCTCCAAGTCAGCG

021217ABMA003540HT (ABMA) M9 phloem Malus domestica cDNA clone ABMA003540, mRNA sequence.
CN912314.1:64-86

TCTCTCTCTCTCTCGACTTTCAAATGGGAA64ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG

021218ABMA004677HT (ABMA) M9 phloem Malus domestica cDNA clone ABMA004677, mRNA sequence.
CN912984.1:67-89

TCTCTCTCTCTCTCGACTTTCAAATGGGAA67ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG

030203ABPB004055HT (ABPB) M9 root tips Malus domestica cDNA clone ABPB004055, mRNA sequence.
CN916207.1:89-111

ACTTTCTCTCTCTAGACTCTCAAATGGGAA89ACTACATCTCATGCACTTTGGCCACGCCTATGATCAAGAGCTCCAAATCAGCG

030203ABPB003816HT (ABPB) M9 root tips Malus domestica cDNA clone ABPB003816, mRNA sequence.
CN916303.1:56-78

TCTCTCTCTCTCTCGACTTTCAAATGGGAA56ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAGTCAGCG

030203ABPB003598HT (ABPB) M9 root tips Malus domestica cDNA clone ABPB003598, mRNA sequence.
CN917956.1:83-105

ACTTTCTCTCTCTAGACTCTCAAATGGGAA83ACTACATCTCATGCACTTTGGCCACGCCTATGATCAAGAGCTCCAAATCAGCG

TSA: Pyrus pyrifolia mRNA, contig: contig_3071.
FX396239.1:18-40

AGACTCTCAAATGGGAA18ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAATCAGCG

TSA: Pyrus x bretschneideri Unigene48333_XinShao mRNA sequence.
JR638450.1:53-75

ACTTTCTCTCTCTAGACTCTCAAATGGGAA53ACTACATCTCATGCACTTTGGCCACGCCGATGATCAAGAGCTCCAAATCAGCG

Prunus dulcis DNA, pseudomolecule Pd01.
AP019297.1:26448367-26448389

TTTTAATTCGTCACAAGTCTAGAATGGGAA26448367ACTACATCTCATGCACTTTGGCCACGCCTCTGATCAAGAGCTCCAAATCAGCA

Malus hybrid cultivar cultivar Royalty chromosome 13.
CP141965.1:38975364-38975386

ACTTTCTCTCTCTAGACTCTCAAATGGGAA38975364ACTACATCTCATGCACTTTGGCCACGCCTATGATCAAGAGCTCCAAATCAGCG

Pyrus communis genome assembly, chromosome: 6.
OY757073.1:28098489-28098511

TCTCTCTCTCTCTAGACTCTCAAATGGGAA28098489ACTACATCTCATGCACTTTGGCCACGCCTATGATCAAGAGCTCCAAATCAGCG

Data Export:

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Debug Info:

0.009 | 0.009 | search_start;
0.118 | 0.109 | search_plus_done; http://172.18.8.135:50400/match?q=GGCCAAAGTGCATGAGATGTAGT&k=0&no_gap=0&offset=0&limit=50
1.138 | 1.020 | search_minus_done; http://172.18.8.135:50400/match?q=ACTACATCTCATGCACTTTGGCC&k=0&no_gap=0&offset=0&limit=26
1.159 | 0.021 | cgi_end;

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